| T00097 | sfl | Shigella flexneri 301 (serotype 2a) |
| T00128 | sfx | Shigella flexneri 2457T (serotype 2a) |
| T00377 | sfv | Shigella flexneri 8401 (serotype 5b) |
| T01883 | sfe | Shigella flexneri 2002017 (serotype Fxv) |
| T03267 | sfn | Shigella flexneri 2003036 |
| T03315 | sfs | Shigella flexneri Shi06HN006 (serotype Yv) |
| T03751 | sft | Shigella flexneri NCTC1 (serotype 2a) |
| T00274 | ssn | Shigella sonnei Ss046 |
| T00301 | sbo | Shigella boydii Sb227 (serotype 4) |
| T00700 | sbc | Shigella boydii CDC 3083-94 (serotype 18) |
| T00306 | sdy | Shigella dysenteriae Sd197 |
| T02933 | sdz | Shigella dysenteriae 1617 (serotype 1) |
| T04390 | shq | Shigella sp. PAMC 28760 |
Genus: Shigella