KEGG Modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:lmo00010 lmo01200 lmo01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:lmo00010 lmo01200 lmo01230 lmo01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lmo00010 lmo00020 lmo01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lmo00010 lmo00020 lmo00620 lmo00785 lmo01200 lmo01210 lmo01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:lmo00020 lmo01200 lmo01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lmo00020 lmo01200 lmo01210 lmo01230 lmo01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lmo00020 lmo01200 lmo01210 lmo01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:lmo00030 lmo01200 lmo01100 lmo01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:lmo00030 lmo01200 lmo01100 lmo01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:lmo00030 lmo01200 lmo01230 lmo01100 lmo01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH:lmo00030 lmo00230 lmo01200 lmo01230 lmo01100]

Other carbohydrate metabolism
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:lmo00052 lmo01100]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:lmo00520 lmo01250 lmo01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:lmo00520 lmo00052 lmo01250 lmo01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:lmo00520 lmo01250 lmo01100]
M00012 Glyoxylate cycle [PATH:lmo00630 lmo01200 lmo01100 lmo01110]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:lmo00280 lmo00630 lmo00640 lmo01200 lmo01100]

Energy metabolism
Carbon fixation
M00168 CAM (Crassulacean acid metabolism), dark [PATH:lmo00620 lmo01200 lmo01100 lmo01120]
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:lmo00430 lmo00620 lmo01200 lmo01100 lmo01120]

Methane metabolism
Nitrogen metabolism
Sulfur metabolism
M00176 Assimilatory sulfate reduction, sulfate => H2S [PATH:lmo00920 lmo01100 lmo01120]

Photosynthesis
ATP synthesis
M00151 Cytochrome bc1 complex respiratory unit [PATH:lmo00190 lmo01100]
M00155 Cytochrome c oxidase, prokaryotes [PATH:lmo00190 lmo01100]
M00416 Cytochrome aa3-600 menaquinol oxidase [PATH:lmo00190 lmo01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:lmo00190 lmo01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:lmo00061 lmo01212 lmo01100]
M00083 Fatty acid biosynthesis, elongation [PATH:lmo00061 lmo01212 lmo01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:lmo00061 lmo00071 lmo01212 lmo01100]
M00087 beta-Oxidation [PATH:lmo00071 lmo01212 lmo01100]

Sterol biosynthesis
Lipid metabolism
M00091 Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:lmo00564 lmo01100]

Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:lmo00230 lmo01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:lmo00230 lmo01232 lmo01240 lmo01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:lmo00230 lmo01232 lmo01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:lmo00230 lmo00240 lmo01232 lmo01100]
M00958 Adenine ribonucleotide degradation, AMP => Urate [PATH:lmo00230 lmo01232 lmo01100]
M00959 Guanine ribonucleotide degradation, GMP => Urate [PATH:lmo00230 lmo01232 lmo01100]

Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:lmo00240 lmo01232 lmo01240 lmo01100]
M00938 Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:lmo00240 lmo01232 lmo01100]

Amino acid metabolism
Serine and threonine metabolism
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:lmo00260 lmo01230 lmo01100 lmo01110]
M00621 Glycine cleavage system [PATH:lmo00260 lmo00630 lmo00785 lmo01200 lmo01100]
M00555 Betaine biosynthesis, choline => betaine [PATH:lmo00260 lmo01100]
M00033 Ectoine biosynthesis, aspartate => ectoine [PATH:lmo00260 lmo01210 lmo01230 lmo01100 lmo01120]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:lmo00270 lmo00920 lmo01200 lmo01230 lmo01100 lmo01110]
M00017 Methionine biosynthesis, aspartate => homoserine => methionine [PATH:lmo00270 lmo01230 lmo01100]
M00035 Methionine degradation [PATH:lmo00270 lmo01100]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:lmo00290 lmo00770 lmo01210 lmo01230 lmo01100 lmo01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:lmo00290 lmo01230 lmo01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:lmo00290 lmo01210 lmo01230 lmo01100 lmo01110]

Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:lmo00300 lmo01230 lmo01100]
M00525 Lysine biosynthesis, acetyl-DAP pathway, aspartate => lysine [PATH:lmo00300 lmo01230 lmo01100]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:lmo00220 lmo01210 lmo01230 lmo01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:lmo00220 lmo01230 lmo01100]
M00015 Proline biosynthesis, glutamate => proline [PATH:lmo00330 lmo01230 lmo01100]
M00970 Proline degradation, proline => glutamate [PATH:lmo00330 lmo01100]

Polyamine biosynthesis
M00135 GABA biosynthesis, eukaryotes, putrescine => GABA [PATH:lmo00330 lmo01100]

Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine [PATH:lmo00340 lmo01230 lmo01100 lmo01110]

Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:lmo00400 lmo01230 lmo01100 lmo01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:lmo00400 lmo01230 lmo01100 lmo01110]

Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:lmo00730 lmo01100]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:lmo00750 lmo01240 lmo01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:lmo00760 lmo01240 lmo01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:lmo00770 lmo01240 lmo01100 lmo01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:lmo00770 lmo01240 lmo01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:lmo00785 lmo01240 lmo01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:lmo00790 lmo00670 lmo01240 lmo01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:lmo00790 lmo01240 lmo01100]
M00140 C1-unit interconversion, prokaryotes [PATH:lmo00670 lmo01240 lmo01100]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:lmo00860 lmo01240 lmo01100]
M00924 Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:lmo00860 lmo01240 lmo01100]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:lmo00860 lmo01240 lmo01100]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:lmo00130 lmo01240 lmo01100 lmo01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
M00096 C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:lmo00900 lmo01100 lmo01110]
M00364 C10-C20 isoprenoid biosynthesis, bacteria [PATH:lmo00900 lmo01100 lmo01110]

Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
M00793 dTDP-L-rhamnose biosynthesis [PATH:lmo00521 lmo00523 lmo00541 lmo01250 lmo01100 lmo01110]

Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
Drug resistance
M00627 beta-Lactam resistance, Bla system [PATH:lmo01501]
M00705 Multidrug resistance, efflux pump MepA

Plant pathogenicity
Symbiosis
Module set
Metabolic capacity