KEGG Modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:neu00010 neu01200 neu01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:neu00010 neu01200 neu01230 neu01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:neu00010 neu00020 neu00620 neu00785 neu01200 neu01210 neu01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:neu00020 neu01200 neu01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:neu00020 neu01200 neu01210 neu01230 neu01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:neu00020 neu01200 neu01210 neu01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:neu00030 neu01200 neu01100 neu01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:neu00030 neu01200 neu01100 neu01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:neu00030 neu01200 neu01230 neu01100 neu01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH:neu00030 neu00230 neu01200 neu01230 neu01100]

Other carbohydrate metabolism
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:neu00500 neu01100]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:neu00520 neu01250 neu01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:neu00520 neu01250 neu01100]

Energy metabolism
Carbon fixation
M00168 CAM (Crassulacean acid metabolism), dark [PATH:neu00620 neu00710 neu01200 neu01100 neu01120]
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:neu00430 neu00620 neu01200 neu01100 neu01120]

Methane metabolism
M00346 Formaldehyde assimilation, serine pathway [PATH:neu00680 neu01200 neu01100 neu01120]

Nitrogen metabolism
M00528 Nitrification, ammonia => nitrite [PATH:neu00910 neu01100 neu01120]

Sulfur metabolism
Photosynthesis
ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes [PATH:neu00190 neu01100]
M00149 Succinate dehydrogenase, prokaryotes [PATH:neu00190 neu01100]
M00151 Cytochrome bc1 complex respiratory unit [PATH:neu00190 neu01100]
M00155 Cytochrome c oxidase, prokaryotes [PATH:neu00190 neu01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:neu00190 neu01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:neu00061 neu01212 neu01100]
M00083 Fatty acid biosynthesis, elongation [PATH:neu00061 neu01212 neu01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:neu00061 neu00071 neu01212 neu01100]

Sterol biosynthesis
Lipid metabolism
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:neu00564 neu01100]

Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:neu00230 neu01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:neu00230 neu01232 neu01240 neu01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:neu00230 neu01232 neu01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:neu00230 neu00240 neu01232 neu01100]

Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:neu00240 neu01232 neu01240 neu01100]
M00938 Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:neu00240 neu01232 neu01100]

Amino acid metabolism
Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH:neu00260 neu00680 neu01200 neu01230 neu01100]
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:neu00260 neu01230 neu01100 neu01110]
M00621 Glycine cleavage system [PATH:neu00260 neu00630 neu00785 neu01200 neu01100]

Cysteine and methionine metabolism
Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:neu00290 neu00770 neu01210 neu01230 neu01100 neu01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:neu00290 neu01230 neu01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:neu00290 neu01210 neu01230 neu01100 neu01110]

Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:neu00300 neu01230 neu01100]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:neu00220 neu01210 neu01230 neu01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:neu00220 neu01230 neu01100]
M00015 Proline biosynthesis, glutamate => proline [PATH:neu00330 neu01230 neu01100]

Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:neu00400 neu01230 neu01100 neu01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:neu00400 neu01230 neu01100 neu01110]

Other amino acid metabolism
M00118 Glutathione biosynthesis, glutamate => glutathione [PATH:neu00480 neu01240 neu01100]

Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:neu00760 neu01240 neu01100]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:neu00770 neu01240 neu01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:neu00780 neu01240 neu01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:neu00780 neu01240 neu01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:neu00785 neu01240 neu01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:neu00790 neu00670 neu01240 neu01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:neu00860 neu01240 neu01100 neu01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:neu00860 neu01240 neu01100 neu01110]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:neu00130 neu01240 neu01100 neu01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
M00793 dTDP-L-rhamnose biosynthesis [PATH:neu00521 neu00523 neu00541 neu01250 neu01100 neu01110]

Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
Drug resistance
M00643 Multidrug resistance, efflux pump MexXY-OprM

Plant pathogenicity
Symbiosis
Module set
Metabolic capacity