KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: pdi00010 pdi01200 pdi01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: pdi00010 pdi01200 pdi01230 pdi01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: pdi00010 pdi00020 pdi01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: pdi00010 pdi00020 pdi00620 pdi00785 pdi01200 pdi01210 pdi01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: pdi00020 pdi01200 pdi01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: pdi00020 pdi01200 pdi01210 pdi01230 pdi01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: pdi00020 pdi01200 pdi01210 pdi01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: pdi00030 pdi01200 pdi01100 pdi01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: pdi00030 pdi01200 pdi01100 pdi01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: pdi00030 pdi01200 pdi01230 pdi01100 pdi01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: pdi00030 pdi00230 pdi01200 pdi01230 pdi01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: pdi00030 pdi01200 pdi01100 pdi01120]
Other carbohydrate metabolism
M00014 Glucuronate pathway (uronate pathway) [PATH: pdi00040 pdi01100]
M00631 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH: pdi00040 pdi00030 pdi01100]
M00061 D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH: pdi00040 pdi00030 pdi01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH: pdi00052 pdi01100]
M00552 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH: pdi00052 pdi01100]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH: pdi00500 pdi01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH: pdi00500 pdi01100]
M00565 Trehalose biosynthesis, D-glucose 1P => trehalose [PATH: pdi00500 pdi01100 pdi01110]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH: pdi00520 pdi01250 pdi01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH: pdi00520 pdi00052 pdi01250 pdi01100]
M00892 UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH: pdi00520 pdi01250 pdi01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH: pdi00520 pdi01250 pdi01100]
M00761 Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH: pdi00520 pdi01100]
M00012 Glyoxylate cycle [PATH: pdi00630 pdi01200 pdi01100 pdi01110]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH: pdi00280 pdi00630 pdi00640 pdi01200 pdi01100]
M00130 Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4 [PATH: pdi00562 pdi01100]
M00131 Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol [PATH: pdi00562 pdi01100]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
M00101 Cholesterol biosynthesis, FPP => cholesterol [PATH: pdi01100]
M00103 Cholecalciferol biosynthesis [PATH: pdi01100]
M00106 Conjugated bile acid biosynthesis, cholate => taurocholate/glycocholate [PATH: pdi01100]
M00862 beta-Oxidation, peroxisome, tri/dihydroxycholestanoyl-CoA => choloyl/chenodeoxycholoyl-CoA [PATH: pdi01100]
M00107 Steroid hormone biosynthesis, cholesterol => pregnenolone => progesterone [PATH: pdi01100]
M00109 C21-Steroid hormone biosynthesis, progesterone => cortisol/cortisone [PATH: pdi01100]
M00110 C19/C18-Steroid hormone biosynthesis, pregnenolone => androstenedione => estrone [PATH: pdi01100]
M00976 C19-Steroid hormone biosynthesis, pregnenolone => testosterone => dihydrotestosterone [PATH: pdi01100]
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: pdi00400 pdi01230 pdi01100 pdi01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: pdi00400 pdi01230 pdi01100 pdi01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH: pdi00400 pdi01230 pdi01100 pdi01110]
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH: pdi00400 pdi01230 pdi01100]
M00040 Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH: pdi00400 pdi01230 pdi01100 pdi01110]
M00042 Catecholamine biosynthesis, tyrosine => dopamine => noradrenaline => adrenaline [PATH: pdi00350 pdi01100]
M00043 Thyroid hormone biosynthesis, tyrosine => triiodothyronine/thyroxine [PATH: pdi00350 pdi01100]
M00044 Tyrosine degradation, tyrosine => homogentisate [PATH: pdi00350 pdi01100]
M00533 Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH: pdi00350 pdi01220 pdi01100 pdi01120]
M00037 Melatonin biosynthesis, animals, tryptophan => serotonin => melatonin [PATH: pdi00380 pdi01100]
M00038 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate [PATH: pdi00380 pdi01100]
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
M00055 N-glycan precursor biosynthesis [PATH: pdi01100]
M00073 N-glycan precursor trimming [PATH: pdi01100]
M00075 N-glycan biosynthesis, complex type [PATH: pdi01100]
M00872 O-glycan biosynthesis, mannose type (core M3) [PATH: pdi01100]
M00070 Glycosphingolipid biosynthesis, lacto-series, LacCer => Lc4Cer [PATH: pdi01100]
M00071 Glycosphingolipid biosynthesis, neolacto-series, LacCer => nLc4Cer [PATH: pdi01100]
M00068 Glycosphingolipid biosynthesis, globo-series, LacCer => Gb4Cer [PATH: pdi01100]
M00069 Glycosphingolipid biosynthesis, ganglio series, LacCer => GT3 [PATH: pdi01100]
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00896 Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP [PATH:pdi00730 pdi01240 pdi01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:pdi00730 pdi01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:pdi00740 pdi01240 pdi01100 pdi01110]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:pdi00750 pdi01240 pdi01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:pdi00760 pdi01240 pdi01100]
M00912 NAD biosynthesis, tryptophan => quinolinate => NAD [PATH:pdi00380 pdi00760 pdi01240 pdi01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:pdi00770 pdi01240 pdi01100 pdi01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:pdi00770 pdi01240 pdi01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:pdi00780 pdi01240 pdi01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pdi00780 pdi01240 pdi01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pdi00785 pdi01240 pdi01100]
M00882 Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:pdi00785 pdi01240 pdi01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:pdi00790 pdi00670 pdi01240 pdi01100]
M00842 Tetrahydrobiopterin biosynthesis, GTP => BH4 [PATH:pdi00790 pdi01240 pdi01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pdi00790 pdi01240 pdi01100]
M00140 C1-unit interconversion, prokaryotes [PATH:pdi00670 pdi01240 pdi01100]
M00141 C1-unit interconversion, eukaryotes [PATH:pdi00670 pdi01240 pdi01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:pdi00860 pdi01240 pdi01100 pdi01110]
M00868 Heme biosynthesis, animals and fungi, glycine => heme [PATH:pdi00860 pdi01240 pdi01100 pdi01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:pdi00860 pdi01240 pdi01100 pdi01110]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:pdi00860 pdi01240 pdi01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:pdi00130 pdi01240 pdi01100 pdi01110]
M00128 Ubiquinone biosynthesis, eukaryotes, 4-hydroxybenzoate + polyprenyl-PP => ubiquinol [PATH:pdi00130 pdi01240 pdi01100]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
Drug resistance
M00649 Multidrug resistance, efflux pump AdeABC [PATH:pdi01501]
M00698 Multidrug resistance, efflux pump BpeEF-OprC
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00615 Nitrate assimilation
M00616 Sulfate-sulfur assimilation
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