KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: pfu00010 pfu01200 pfu01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: pfu00010 pfu01200 pfu01230 pfu01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: pfu00010 pfu00020 pfu01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: pfu00010 pfu00020 pfu00620 pfu00785 pfu01200 pfu01210 pfu01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: pfu00020 pfu01200 pfu01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: pfu00020 pfu01200 pfu01210 pfu01230 pfu01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: pfu00020 pfu01200 pfu01210 pfu01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: pfu00030 pfu01200 pfu01100 pfu01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: pfu00030 pfu01200 pfu01100 pfu01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: pfu00030 pfu01200 pfu01230 pfu01100 pfu01120]
M00580 Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH: pfu00030 pfu01200 pfu01230 pfu01100 pfu01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: pfu00030 pfu00230 pfu01200 pfu01230 pfu01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: pfu00030 pfu01200 pfu01100 pfu01120]
Other carbohydrate metabolism
M00014 Glucuronate pathway (uronate pathway) [PATH: pfu00040 pfu01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH: pfu00052 pfu01100]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH: pfu00500 pfu01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH: pfu00500 pfu01100]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH: pfu00520 pfu01250 pfu01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH: pfu00520 pfu00052 pfu01250 pfu01100]
M00892 UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH: pfu00520 pfu01250 pfu01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH: pfu00520 pfu01250 pfu01100]
M00012 Glyoxylate cycle [PATH: pfu00630 pfu01200 pfu01100 pfu01110]
M00013 Malonate semialdehyde pathway, propanoyl-CoA => acetyl-CoA [PATH: pfu00410 pfu00640 pfu01200 pfu01100]
M00968 Pentose bisphosphate pathway (nucleoside degradation), archaea, nucleoside/NMP => 3-PGA/glycerone phosphate [PATH: pfu00030 pfu00230 pfu00240 pfu00630 pfu01100]
M00130 Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4 [PATH: pfu00562 pfu01100]
M00131 Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol [PATH: pfu00562 pfu01100]
M00132 Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH: pfu00562 pfu01100]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH: pfu00300 pfu01230 pfu01100]
M00526 Lysine biosynthesis, DAP dehydrogenase pathway, aspartate => lysine [PATH: pfu00300 pfu01230 pfu01100]
M00031 Lysine biosynthesis, mediated by LysW, 2-aminoadipate => lysine [PATH: pfu00300 pfu01210 pfu01230 pfu01100]
M00957 Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA [PATH: pfu01100 pfu01120]
M00960 Lysine degradation, bacteria, L-lysine => D-lysine => succinate [PATH: pfu01100 pfu01120]
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
M00057 Glycosaminoglycan biosynthesis, linkage tetrasaccharide [PATH: pfu01100]
M00059 Glycosaminoglycan biosynthesis, heparan sulfate backbone [PATH: pfu01100]
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00896 Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP [PATH:pfu00730 pfu01240 pfu01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:pfu00730 pfu01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:pfu00740 pfu01240 pfu01100 pfu01110]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:pfu00750 pfu01240 pfu01100]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:pfu00750 pfu01240 pfu01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:pfu00760 pfu01240 pfu01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:pfu00770 pfu01240 pfu01100 pfu01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:pfu00770 pfu01240 pfu01100]
M00914 Coenzyme A biosynthesis, archaea, 2-oxoisovalerate => 4-phosphopantoate => CoA [PATH:pfu00770 pfu01240 pfu01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:pfu00780 pfu01240 pfu01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pfu00780 pfu01240 pfu01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pfu00785 pfu01240 pfu01100]
M00882 Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:pfu00785 pfu01240 pfu01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:pfu00785 pfu01240 pfu01100]
M00842 Tetrahydrobiopterin biosynthesis, GTP => BH4 [PATH:pfu00790 pfu01240 pfu01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pfu00790 pfu01240 pfu01100]
M00140 C1-unit interconversion, prokaryotes [PATH:pfu00670 pfu01240 pfu01100]
M00141 C1-unit interconversion, eukaryotes [PATH:pfu00670 pfu01240 pfu01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:pfu00860 pfu01240 pfu01100 pfu01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:pfu00860 pfu01240 pfu01100 pfu01110]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:pfu00860 pfu01240 pfu01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:pfu01240 pfu01100 pfu01110]
M00128 Ubiquinone biosynthesis, eukaryotes, 4-hydroxybenzoate + polyprenyl-PP => ubiquinol [PATH:pfu01240 pfu01100]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
Drug resistance
M00745 Imipenem resistance, repression of porin OprD
M00641 Multidrug resistance, efflux pump MexEF-OprN
M00642 Multidrug resistance, efflux pump MexJK-OprM
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00616 Sulfate-sulfur assimilation
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