KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: sen00010 sen01200 sen01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: sen00010 sen01200 sen01230 sen01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: sen00010 sen00020 sen01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: sen00010 sen00020 sen00620 sen00785 sen01200 sen01210 sen01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: sen00020 sen01200 sen01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: sen00020 sen01200 sen01210 sen01230 sen01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: sen00020 sen01200 sen01210 sen01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: sen00030 sen01200 sen01100 sen01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: sen00030 sen01200 sen01100 sen01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: sen00030 sen01200 sen01230 sen01100 sen01120]
M00580 Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH: sen00030 sen01200 sen01230 sen01100 sen01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: sen00030 sen00230 sen01200 sen01230 sen01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: sen00030 sen01200 sen01100 sen01120]
Other carbohydrate metabolism
M00631 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:sen00040 sen00030 sen01100]
M00061 D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:sen00040 sen00030 sen01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:sen00052 sen01100]
M00552 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:sen00052 sen01100]
M00550 Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:sen00053 sen01100 sen01120]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:sen00500 sen01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH:sen00500 sen01100]
M00565 Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:sen00500 sen01100 sen01110]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:sen00520 sen01250 sen01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:sen00520 sen00052 sen01250 sen01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:sen00520 sen01250 sen01100]
M00761 Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:sen00520 sen01100]
M00012 Glyoxylate cycle [PATH:sen00630 sen01200 sen01100 sen01110]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:sen00280 sen00630 sen00640 sen01200 sen01100]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00127 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH: sen00730 sen01240 sen01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH: sen00730 sen01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH: sen00740 sen01240 sen01100 sen01110]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH: sen00750 sen01240 sen01100]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH: sen00750 sen01240 sen01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH: sen00760 sen01240 sen01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH: sen00770 sen01240 sen01100 sen01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH: sen00770 sen01240 sen01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH: sen00780 sen01240 sen01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH: sen00780 sen01240 sen01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH: sen00785 sen01240 sen01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH: sen00790 sen00670 sen01240 sen01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH: sen00790 sen01240 sen01100]
M00140 C1-unit interconversion, prokaryotes [PATH: sen00670 sen01240 sen01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH: sen00860 sen01240 sen01100 sen01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH: sen00860 sen01240 sen01100 sen01110]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH: sen00860 sen01240 sen01100]
M00924 Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH: sen00860 sen01240 sen01100]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH: sen00860 sen01240 sen01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH: sen00130 sen01240 sen01100 sen01110]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH: sen00130 sen01240 sen01100 sen01110]
M00930 Menaquinone biosynthesis, futalosine pathway [PATH: sen00130 sen01240 sen01100]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
M00856 Salmonella enterica pathogenicity signature, typhoid toxin
M00857 Salmonella enterica pathogenicity signature, Vi antigen
Drug resistance
M00627 beta-Lactam resistance, Bla system [PATH:sen01501]
M00744 Cationic antimicrobial peptide (CAMP) resistance, protease PgtE
M00696 Multidrug resistance, efflux pump AcrEF-TolC
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00616 Sulfate-sulfur assimilation
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