KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: spa00010 spa01200 spa01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: spa00010 spa01200 spa01230 spa01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: spa00010 spa00020 spa01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: spa00010 spa00020 spa00620 spa00785 spa01200 spa01210 spa01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: spa00020 spa01200 spa01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: spa00020 spa01200 spa01210 spa01230 spa01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: spa00020 spa01200 spa01210 spa01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: spa00030 spa01200 spa01100 spa01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: spa00030 spa01200 spa01100 spa01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: spa00030 spa01200 spa01230 spa01100 spa01120]
M00580 Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH: spa00030 spa01200 spa01230 spa01100 spa01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: spa00030 spa00230 spa01200 spa01230 spa01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: spa00030 spa01200 spa01100 spa01120]
Other carbohydrate metabolism
M00061 D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:spa00040 spa00030 spa01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:spa00052 spa01100]
M00550 Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:spa00053 spa01100 spa01120]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:spa00500 spa01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH:spa00500 spa01100]
M00565 Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:spa00500 spa01100 spa01110]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:spa00520 spa01250 spa01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:spa00520 spa00052 spa01250 spa01100]
M00892 UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH:spa00520 spa01250 spa01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:spa00520 spa01250 spa01100]
M00012 Glyoxylate cycle [PATH:spa00630 spa01200 spa01100 spa01110]
M00013 Malonate semialdehyde pathway, propanoyl-CoA => acetyl-CoA [PATH:spa00640 spa01200 spa01100]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:spa00280 spa00630 spa00640 spa01200 spa01100]
M00132 Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH:spa00562 spa01100]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00898 Thiamine biosynthesis, pyridoxal-5P => TMP/thiamine/TPP [PATH:spa00730 spa01240 spa01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:spa00730 spa01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:spa00740 spa01240 spa01100 spa01110]
M00911 Riboflavin biosynthesis, fungi, GTP => riboflavin/FMN/FAD [PATH:spa00740 spa01240 spa01100]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:spa00750 spa01240 spa01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:spa00760 spa01240 spa01100]
M00912 NAD biosynthesis, tryptophan => quinolinate => NAD [PATH:spa00380 spa00760 spa01240 spa01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:spa00770 spa01240 spa01100 spa01110]
M00913 Pantothenate biosynthesis, 2-oxoisovalerate/spermine => pantothenate [PATH:spa00770 spa01240 spa01100]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:spa00770 spa01240 spa01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:spa00780 spa01240 spa01100]
M00577 Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin [PATH:spa00780 spa01240 spa01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:spa00785 spa01240 spa01100]
M00882 Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:spa00785 spa01240 spa01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:spa00785 spa01240 spa01100]
M00884 Lipoic acid biosynthesis, octanoyl-CoA => dihydrolipoyl-E2 [PATH:spa00785 spa01240 spa01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:spa00790 spa00670 spa01240 spa01100]
M00841 Tetrahydrofolate biosynthesis, mediated by PTPS, GTP => THF [PATH:spa00790 spa01240 spa01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:spa00790 spa01240 spa01100]
M00140 C1-unit interconversion, prokaryotes [PATH:spa00670 spa01240 spa01100]
M00141 C1-unit interconversion, eukaryotes [PATH:spa00670 spa01240 spa01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:spa01240 spa01100 spa01110]
M00868 Heme biosynthesis, animals and fungi, glycine => heme [PATH:spa01240 spa01100 spa01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:spa01240 spa01100 spa01110]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:spa01240 spa01100]
M00925 Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide [PATH:spa01240 spa01100]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:spa01240 spa01100]
M00128 Ubiquinone biosynthesis, eukaryotes, 4-hydroxybenzoate + polyprenyl-PP => ubiquinol [PATH:spa01240 spa01100]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:spa01240 spa01100 spa01110]
M00930 Menaquinone biosynthesis, futalosine pathway [PATH:spa01240 spa01100]
M00931 Menaquinone biosynthesis, modified futalosine pathway [PATH:spa01240 spa01100]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
Drug resistance
M00627 beta-Lactam resistance, Bla system [PATH:spa01501]
M00725 Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [PATH:spa01503]
M00726 Cationic antimicrobial peptide (CAMP) resistance, lysyl-phosphatidylglycerol (L-PG) synthase MprF [PATH:spa01503]
M00730 Cationic antimicrobial peptide (CAMP) resistance, VraFG transporter [PATH:spa01503]
M00642 Multidrug resistance, efflux pump MexJK-OprM
M00649 Multidrug resistance, efflux pump AdeABC [PATH:spa01501]
M00700 Multidrug resistance, efflux pump AbcA
M00702 Multidrug resistance, efflux pump NorB
M00705 Multidrug resistance, efflux pump MepA
Plant pathogenicity
Symbiosis
Module set
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