KEGG Modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00002 Glycolysis, core module involving three-carbon compounds [PATH:vpa00010 vpa01200 vpa01230 vpa01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vpa00010 vpa00020 vpa01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vpa00010 vpa00020 vpa00620 vpa00785 vpa01200 vpa01210 vpa01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:vpa00020 vpa01200 vpa01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vpa00020 vpa01200 vpa01210 vpa01230 vpa01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vpa00020 vpa01200 vpa01210 vpa01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:vpa00030 vpa01200 vpa01100 vpa01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:vpa00030 vpa01200 vpa01100 vpa01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:vpa00030 vpa01200 vpa01230 vpa01100 vpa01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH:vpa00030 vpa00230 vpa01200 vpa01230 vpa01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:vpa00030 vpa01200 vpa01100 vpa01120]

Other carbohydrate metabolism
M00061 D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:vpa00040 vpa00030 vpa01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:vpa00052 vpa01100]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:vpa00500 vpa01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH:vpa00500 vpa01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:vpa00520 vpa00052 vpa01250 vpa01100]
M00012 Glyoxylate cycle [PATH:vpa00630 vpa01200 vpa01100 vpa01110]

Energy metabolism
Carbon fixation
M00168 CAM (Crassulacean acid metabolism), dark [PATH:vpa00620 vpa01200 vpa01100 vpa01120]
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:vpa00430 vpa00620 vpa01200 vpa01100 vpa01120]

Methane metabolism
Nitrogen metabolism
M00530 Dissimilatory nitrate reduction, nitrate => ammonia [PATH:vpa00910 vpa01100 vpa01120]

Sulfur metabolism
M00176 Assimilatory sulfate reduction, sulfate => H2S [PATH:vpa00920 vpa01100 vpa01120]

Photosynthesis
ATP synthesis
M00149 Succinate dehydrogenase, prokaryotes [PATH:vpa00190 vpa01100]
M00150 Fumarate reductase, prokaryotes [PATH:vpa00190 vpa01100]
M00151 Cytochrome bc1 complex respiratory unit [PATH:vpa00190 vpa01100]
M00155 Cytochrome c oxidase, prokaryotes [PATH:vpa00190 vpa01100]
M00417 Cytochrome o ubiquinol oxidase [PATH:vpa00190 vpa01100]
M00156 Cytochrome c oxidase, cbb3-type [PATH:vpa00190 vpa01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:vpa00190 vpa01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:vpa00061 vpa01212 vpa01100]
M00083 Fatty acid biosynthesis, elongation [PATH:vpa00061 vpa01212 vpa01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:vpa00061 vpa00071 vpa01212 vpa01100]
M00087 beta-Oxidation [PATH:vpa00071 vpa01212 vpa01100]

Sterol biosynthesis
Lipid metabolism
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:vpa00564 vpa01100]

Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:vpa00230 vpa01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:vpa00230 vpa01232 vpa01240 vpa01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:vpa00230 vpa01232 vpa01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:vpa00230 vpa00240 vpa01232 vpa01100]

Pyrimidine metabolism
M00051 De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:vpa00240 vpa01240 vpa01100]
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:vpa00240 vpa01232 vpa01240 vpa01100]

Amino acid metabolism
Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH:vpa00260 vpa00680 vpa01200 vpa01230 vpa01100]
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:vpa00260 vpa01230 vpa01100 vpa01110]
M00621 Glycine cleavage system [PATH:vpa00260 vpa00630 vpa00785 vpa01200 vpa01100]
M00555 Betaine biosynthesis, choline => betaine [PATH:vpa00260 vpa01100]
M00033 Ectoine biosynthesis, aspartate => ectoine [PATH:vpa00260 vpa01210 vpa01230 vpa01100 vpa01120]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:vpa00270 vpa00920 vpa01200 vpa01230 vpa01100 vpa01110]
M00017 Methionine biosynthesis, aspartate => homoserine => methionine [PATH:vpa00270 vpa01230 vpa01100]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:vpa00290 vpa00770 vpa01210 vpa01230 vpa01100 vpa01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:vpa00290 vpa01230 vpa01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:vpa00290 vpa01210 vpa01230 vpa01100 vpa01110]
M00036 Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:vpa00280 vpa01100]

Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:vpa00300 vpa01230 vpa01100]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:vpa00220 vpa01210 vpa01230 vpa01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:vpa00220 vpa01230 vpa01100]
M00015 Proline biosynthesis, glutamate => proline [PATH:vpa00330 vpa01230 vpa01100]
M00970 Proline degradation, proline => glutamate [PATH:vpa00330 vpa01100]

Polyamine biosynthesis
Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine [PATH:vpa00340 vpa01230 vpa01100 vpa01110]
M00045 Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:vpa00340 vpa01100]

Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:vpa00400 vpa01230 vpa01100 vpa01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:vpa00400 vpa01230 vpa01100 vpa01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:vpa00400 vpa01230 vpa01100 vpa01110]
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:vpa00400 vpa01230 vpa01100]
M00044 Tyrosine degradation, tyrosine => homogentisate [PATH:vpa00350 vpa01100]

Other amino acid metabolism
M00118 Glutathione biosynthesis, glutamate => glutathione [PATH:vpa00480 vpa01240 vpa01100]
M00948 Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:vpa00470 vpa01100]

Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
M00060 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:vpa00540 vpa01100]
M00064 ADP-L-glycero-D-manno-heptose biosynthesis [PATH:vpa00540 vpa01250 vpa01100]

Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00127 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:vpa00730 vpa01240 vpa01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:vpa00730 vpa01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:vpa00740 vpa01240 vpa01100 vpa01110]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:vpa00750 vpa01240 vpa01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:vpa00760 vpa01240 vpa01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:vpa00780 vpa01240 vpa01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:vpa00785 vpa01240 vpa01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:vpa00790 vpa00670 vpa01240 vpa01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:vpa00790 vpa01240 vpa01100]
M00140 C1-unit interconversion, prokaryotes [PATH:vpa00670 vpa01240 vpa01100]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:vpa00860 vpa01240 vpa01100 vpa01110]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:vpa00860 vpa01240 vpa01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:vpa00130 vpa01240 vpa01100 vpa01110]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:vpa00130 vpa01240 vpa01100 vpa01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
M00096 C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:vpa00900 vpa01100 vpa01110]
M00364 C10-C20 isoprenoid biosynthesis, bacteria [PATH:vpa00900 vpa01100 vpa01110]

Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
M00793 dTDP-L-rhamnose biosynthesis [PATH:vpa00521 vpa00523 vpa00541 vpa01250 vpa01100 vpa01110]

Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
Drug resistance
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity