T number | T08173 |
Org_code | bcoi |
Name | Borrelia coriaceae Co53 |
Category | Type strain |
Annotation | yes |
Taxonomy | TAX: 144 |
Lineage | Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia |
Brite | KEGG organisms [BR:br08601]
KEGG organisms in the NCBI taxonomy [BR:br08610]
KEGG organisms in taxonomic ranks [BR:br08611] |
Data source | GenBank (Assembly: GCA_023035295.1 Complete Genome) BioProject: 637792 |
Keywords | Human pathogen |
Disease | H00427 Relapsing fever |
Comment | Soft tick-borne relapsing fever Borrelia species isolated in the Western Hemisphere. Isolated from Ornithodoros coriaceus in California, USA.
|
Chromosome | |
Sequence | GB: CP075076 |
Length | 920509 |
Plasmid | cp29; Circular |
Sequence | GB: CP075077 |
Length | 29098 |
Plasmid | cp30-1; Circular |
Sequence | GB: CP075078 |
Length | 30410 |
Plasmid | cp30-2; Circular |
Sequence | GB: CP075079 |
Length | 29804 |
Plasmid | cp30-3; Circular |
Sequence | GB: CP075080 |
Length | 30242 |
Plasmid | cp48; Circular |
Sequence | GB: CP075081 |
Length | 48229 |
Plasmid | lp11 |
Sequence | GB: CP075082 |
Length | 10596 |
Plasmid | lp188 |
Sequence | GB: CP075083 |
Length | 188079 |
Plasmid | lp20 |
Sequence | GB: CP075084 |
Length | 20414 |
Plasmid | lp23 |
Sequence | GB: CP075085 |
Length | 22615 |
Plasmid | lp24-1 |
Sequence | GB: CP075086 |
Length | 24381 |
Plasmid | lp24-2 |
Sequence | GB: CP075087 |
Length | 23569 |
Plasmid | lp28-1 |
Sequence | GB: CP075088 |
Length | 28073 |
Plasmid | lp28-2 |
Sequence | GB: CP075089 |
Length | 27642 |
Plasmid | lp29-1 |
Sequence | GB: CP075090 |
Length | 28973 |
Plasmid | lp29-2 |
Sequence | GB: CP075091 |
Length | 28495 |
Plasmid | lp30 |
Sequence | GB: CP075092 |
Length | 29837 |
Plasmid | lp31 |
Sequence | GB: CP075093 |
Length | 30607 |
Plasmid | lp32 |
Sequence | GB: CP075094 |
Length | 32427 |
Plasmid | lp33 |
Sequence | GB: CP075095 |
Length | 32505 |
Plasmid | lp34 |
Sequence | GB: CP075096 |
Length | 33856 |
Plasmid | lp38 |
Sequence | GB: CP075097 |
Length | 38423 |
Plasmid | lp39 |
Sequence | GB: CP075098 |
Length | 39066 |
Plasmid | lp60 |
Sequence | GB: CP075099 |
Length | 59483 |
Statistics | Number of nucleotides: 1787333 Number of protein genes: 1656 Number of RNA genes: 38
|
Created | 2022 |
Reference | PMID: 35641918 |
Authors | Kneubehl AR, Krishnavajhala A, Leal SM, Replogle AJ, Kingry LC, Bermudez SE, Labruna MB, Lopez JE |
Title | Comparative genomics of the Western Hemisphere soft tick-borne relapsing fever borreliae highlights extensive plasmid diversity. |
Journal | BMC Genomics 23:410 (2022) DOI: 10.1186/s12864-022-08523-7 |