<!-- DTD for KEGG Markup Language v0.7.2 --> <!-- Positive number type --> <!ENTITY % number.type "NMTOKEN"> <!-- String type --> <!ENTITY % string.type "CDATA"> <!-- ID type --> <!ENTITY % id.type "%number.type;"> <!-- IDREF type --> <!ENTITY % idref.type "%number.type;"> <!-- URL type --> <!ENTITY % url.type "%string.type;"> <!-- KEGGID type KEGG ID form : "[db]:[accession]" --> <!ENTITY % keggid.type "%string.type;"> <!-- MAPORG type organism prefix or "map" or "enzyme" --> <!ENTITY % maporg.type "%string.type;"> <!-- MAPNUMBER type map number : The five-digit number --> <!ENTITY % mapnumber.type "%string.type;"> <!-- Type of Entry --> <!ENTITY % entry-type.type "(ortholog|enzyme|reaction|gene|group|compound|map|brite|other)"> <!-- Type of graphics shape --> <!ENTITY % graphics-type.type "(rectangle|circle|roundrectangle|line)"> <!-- Color type of graphics this type is a string that represents the color to be used by the Graphic object. The color is a numerical RGB specification. ex) #FFFFFF --> <!ENTITY % graphics-color.type "%string.type;"> <!-- Type of Relation --> <!ENTITY % relation-type.type "(ECrel|PPrel|GErel|PCrel|maplink)"> <!-- Name of Subtype (compound|activation|inhibition|expression|repression| indirect effect|state change|binding/association| dissociation|phosphorylation|dephosphorylation| glycosylation|ubiquitination|methylation|missing interaction) --> <!ENTITY % subtype-name.type "%string.type;"> <!-- Value of Subtype --> <!ENTITY % subtype-value.type "%string.type;"> <!-- Type of Reaction --> <!ENTITY % reaction-type.type "(reversible|irreversible)"> <!ELEMENT pathway (entry*,relation*,reaction*)> <!ATTLIST pathway name %keggid.type; #REQUIRED> <!ATTLIST pathway number %mapnumber.type; #REQUIRED> <!ATTLIST pathway org %maporg.type; #REQUIRED> <!ATTLIST pathway title %string.type; #IMPLIED> <!ATTLIST pathway image %url.type; #IMPLIED> <!ATTLIST pathway link %url.type; #IMPLIED> <!ELEMENT entry (graphics*,component*)> <!ATTLIST entry id %id.type; #REQUIRED> <!ATTLIST entry name %string.type; #REQUIRED> <!ATTLIST entry type %entry-type.type; #REQUIRED> <!ATTLIST entry link %url.type; #IMPLIED> <!ATTLIST entry reaction %keggid.type; #IMPLIED> <!ELEMENT graphics EMPTY> <!ATTLIST graphics name %string.type; #IMPLIED > <!ATTLIST graphics x %number.type; #IMPLIED > <!ATTLIST graphics y %number.type; #IMPLIED > <!ATTLIST graphics coords %string.type; #IMPLIED > <!ATTLIST graphics type %graphics-type.type; "rectangle"> <!ATTLIST graphics width %number.type; "45" > <!ATTLIST graphics height %number.type; "17" > <!ATTLIST graphics fgcolor %graphics-color.type; "#000000" > <!ATTLIST graphics bgcolor %graphics-color.type; "#FFFFFF" > <!ELEMENT component EMPTY> <!ATTLIST component id %id.type; #REQUIRED> <!ELEMENT relation (subtype*)> <!ATTLIST relation entry1 %idref.type; #REQUIRED> <!-- This attribute value indicates attribute of ID defined in the entry. --> <!ATTLIST relation entry2 %idref.type; #REQUIRED> <!-- This attribute value indicates attribute of ID defined in the entry. --> <!ATTLIST relation type %relation-type.type; #REQUIRED> <!ELEMENT subtype EMPTY> <!ATTLIST subtype name %subtype-name.type; #REQUIRED> <!ATTLIST subtype value %subtype-value.type; #REQUIRED> <!ELEMENT reaction (substrate*,product*)> <!ATTLIST reaction id %id.type; #REQUIRED> <!ATTLIST reaction name %keggid.type; #REQUIRED> <!ATTLIST reaction type %reaction-type.type; #REQUIRED> <!ELEMENT substrate (alt?)> <!ATTLIST substrate id %id.type; #REQUIRED> <!ATTLIST substrate name %keggid.type; #REQUIRED> <!ELEMENT product (alt?)> <!ATTLIST product id %id.type; #REQUIRED> <!ATTLIST product name %keggid.type; #REQUIRED> <!ELEMENT alt EMPTY> <!ATTLIST alt name %keggid.type; #REQUIRED>