VH DB

Rattus
Scientific NameRattus [TAX:10114]
Lineagecellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae

Known viruses (17)
Scientific NameAmphotropic murine leukemia virus [TAX:188539]
LineageViruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Gammaretrovirus; Murine leukemia virus; unclassified Murine leukemia virus
GenBank
Amphotropic murine leukemia virus strain 1313, complete genome.
Evidence Literature
   Reference PMID: 17147829
      Authors Howard TM, Sheng Z, Wang M, Wu Y, Rasheed S
      Title Molecular and phylogenetic analyses of a new amphotropic murine leukemia virus (MuLV-1313).
      Journal Virol J. 2006 Dec 5;3:101.
   Comment Culture cell line: RD cells, chicken embryo cells, rat embryo cells
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Scientific NameBeilong virus [TAX:341053]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Orthoparamyxovirinae; Jeilongvirus; Jeilongvirus beilongi
RefSeq
Beilong virus, complete genome.
Evidence Literature
   Reference PMID: 17397895
      Authors Magoffin DE, Mackenzie JS, Wang LF
      Title Genetic analysis of J-virus and Beilong virus using minireplicons.
      Journal Virology. 2007 Jul 20;364(1):103-11.
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Scientific NameBetapolyomavirus securanorvegicus [TAX:1919247]
LineageViruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Betapolyomavirus
RefSeq
Rattus norvegicus polyomavirus 2 isolate 1014-2016-2, complete genome.
Betapolyomavirus securanorvegicus strain PITT4, complete genome.
Evidence RefSeq
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Scientific NameCocal virus [TAX:50713]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Vesiculovirus; Vesiculovirus cocal
RefSeq
Cocal virus Indiana 2, complete genome.
Evidence Literature
   Reference PMID: 18512001
      Authors Pauszek SJ, Allende R, Rodriguez LL
      Title Characterization of the full-length genomic sequences of vesicular stomatitis Cocal and Alagoas viruses.
      Journal Arch Virol. 2008;153(7):1353-7.
   Comment Culture cell line: BHK-21 cells
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Scientific NameGemycircularvirus gemy-ch-rat1 [TAX:1708653]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus ratas1; Rat associated gemycircularvirus 1
RefSeq
Gemycircularvirus gemy-ch-rat1, complete genome.
Evidence RefSeq
Evidence Literature
   Reference PMID: 26303898
      Authors Li W, Gu Y, Shen Q, Yang S, Wang X, Wan Y, Zhang W
      Title A novel gemycircularvirus from experimental rats.
      Journal Virus Genes. 2015 Oct;51(2):302-5.
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Scientific NameGokushovirus WZ-2015a [TAX:1758150]
LineageViruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; Gokushovirinae; unclassified Gokushovirinae
GenBank
Gokushovirus WZ-2015a isolate 01Fra06, complete genome.
Gokushovirus WZ-2015a isolate 02Fra12, complete genome.
Gokushovirus WZ-2015a isolate 03Fra061, complete genome.
Gokushovirus WZ-2015a isolate 04Fra22, complete genome.
Gokushovirus WZ-2015a isolate 05Brd06, complete genome.
Gokushovirus WZ-2015a isolate 06Mk06, complete genome.
Gokushovirus WZ-2015a isolate 07Ct04, complete genome.
Gokushovirus WZ-2015a isolate 08Mky24, complete genome.
Gokushovirus WZ-2015a isolate 09Rcn03, complete genome.
Gokushovirus WZ-2015a isolate 10Mky22, complete genome.
Gokushovirus WZ-2015a isolate 11Rcn07, complete genome.
Gokushovirus WZ-2015a isolate 12Fra21, complete genome.
Gokushovirus WZ-2015a isolate 13Mky11, complete genome.
Gokushovirus WZ-2015a isolate 14Ct02, complete genome.
Gokushovirus WZ-2015a isolate 15Fra10, complete genome.
Gokushovirus WZ-2015a isolate 16IC3, complete genome.
Gokushovirus WZ-2015a isolate 17Fra18, complete genome.
Gokushovirus WZ-2015a isolate 18Fx10, complete genome.
Gokushovirus WZ-2015a isolate 19Fra14, complete genome.
Gokushovirus WZ-2015a isolate 20Rcn02, complete genome.
Gokushovirus WZ-2015a isolate 21Fx9, complete genome.
Gokushovirus WZ-2015a isolate 22Mky17, complete genome.
Gokushovirus WZ-2015a isolate 23Fra13, complete genome.
Gokushovirus WZ-2015a isolate 24Fra20, complete genome.
Gokushovirus WZ-2015a isolate 25Fra16, complete genome.
Gokushovirus WZ-2015a isolate 26Brd07, complete genome.
Gokushovirus WZ-2015a isolate 27Mky09, complete genome.
Gokushovirus WZ-2015a isolate 28Mky14, complete genome.
Gokushovirus WZ-2015a isolate 29Fx2, complete genome.
Gokushovirus WZ-2015a isolate 30Rcn04, complete genome.
Gokushovirus WZ-2015a isolate 31Fra11, complete genome.
Gokushovirus WZ-2015a isolate 32Mky02, complete genome.
Gokushovirus WZ-2015a isolate 33Mky03, complete genome.
Gokushovirus WZ-2015a isolate 34Fra04, complete genome.
Gokushovirus WZ-2015a isolate 35Fra05, complete genome.
Gokushovirus WZ-2015a isolate 36Fra03, complete genome.
Gokushovirus WZ-2015a isolate 37Mk04, complete genome.
Gokushovirus WZ-2015a isolate 38Chd443, complete genome.
Gokushovirus WZ-2015a isolate 39Rt2, complete genome.
Gokushovirus WZ-2015a isolate 40Chd434, complete genome.
Gokushovirus WZ-2015a isolate 41Mky07, complete genome.
Gokushovirus WZ-2015a isolate 42Fra01, complete genome.
Gokushovirus WZ-2015a isolate 43Fra07, complete genome.
Gokushovirus WZ-2015a isolate 44Mky08, complete genome.
Gokushovirus WZ-2015a isolate 45Mky19, complete genome.
Gokushovirus WZ-2015a isolate 46Fx8, complete genome.
Gokushovirus WZ-2015a isolate 47Fra09, complete genome.
Gokushovirus WZ-2015a isolate 48Chd478, complete genome.
Gokushovirus WZ-2015a isolate 49Fx1, complete genome.
Gokushovirus WZ-2015a isolate 50Chd433, complete genome.
Gokushovirus WZ-2015a isolate 51Fra19, complete genome.
Gokushovirus WZ-2015a isolate 52Mk03, complete genome.
Gokushovirus WZ-2015a isolate 53Rcn05, complete genome.
Gokushovirus WZ-2015a isolate 54Mky12, complete genome.
Gokushovirus WZ-2015a isolate 55Mky20, complete genome.
Gokushovirus WZ-2015a isolate 56Mky13, complete genome.
Gokushovirus WZ-2015a isolate 57Mky16, complete genome.
Gokushovirus WZ-2015a isolate 58Brd09, complete genome.
Gokushovirus WZ-2015a isolate 59Mky06, complete genome.
Gokushovirus WZ-2015a isolate 60Brd01, complete genome.
Gokushovirus WZ-2015a isolate 61Brd11, complete genome.
Gokushovirus WZ-2015a isolate 62Brd02, complete genome.
Gokushovirus WZ-2015a isolate 63CrownNew1, complete genome.
Gokushovirus WZ-2015a isolate 64Brd03, complete genome.
Gokushovirus WZ-2015a isolate 65Brd05, complete genome.
Gokushovirus WZ-2015a isolate 66Brd04, complete genome.
Gokushovirus WZ-2015a isolate 67IC2, complete genome.
Gokushovirus WZ-2015a isolate 68Fx3, complete genome.
Gokushovirus WZ-2015a isolate 69Rcn08, complete genome.
Gokushovirus WZ-2015a isolate 70Chd477, complete genome.
Gokushovirus WZ-2015a isolate 71Chd502-1, complete genome.
Gokushovirus WZ-2015a isolate 72Mk01, complete genome.
Gokushovirus WZ-2015a isolate 73Mky18, complete genome.
Gokushovirus WZ-2015a isolate 74Chd23, complete genome.
Gokushovirus WZ-2015a isolate 75Mky05, complete genome.
Gokushovirus WZ-2015a isolate 76Mky15, complete genome.
Gokushovirus WZ-2015a isolate 77Fx5, complete genome.
Gokushovirus WZ-2015a isolate 78Fra08, complete genome.
Gokushovirus WZ-2015a isolate 79Mky01, complete genome.
Gokushovirus WZ-2015a isolate 80ct01, complete genome.
Gokushovirus WZ-2015a isolate 81Fra17, complete genome.
Gokushovirus WZ-2015a isolate 82Fx7, complete genome.
Gokushovirus WZ-2015a isolate 83Mk07, complete genome.
Gokushovirus WZ-2015a isolate 84Fx6, complete genome.
Gokushovirus WZ-2015a isolate 85Mky10, complete genome.
Gokushovirus WZ-2015a isolate 86Rcn01, complete genome.
Gokushovirus WZ-2015a isolate 87Rt1, complete genome.
Evidence GenBank
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Scientific NameHuman mastadenovirus D [TAX:130310]
LineageViruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Mastadenovirus
RefSeq
Human adenovirus D, complete genome.
DISEASE
H01320  
Epidemic keratoconjunctivitis
Evidence Literature
   Reference PMID: 9971839
      Authors Chillon M, Bosch A, Zabner J, Law L, Armentano D, Welsh MJ, Davidson BL
      Title Group D adenoviruses infect primary central nervous system cells more efficiently than those from group C.
      Journal J Virol. 1999 Mar;73(3):2537-40.
   Comment Culture cell line: HUVEC cells, Fetal rat CNS cells
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Scientific NameMammarenavirus lassaense [TAX:3052310]
LineageViruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Arenaviridae; Mammarenavirus
RefSeq
Lassa virus segment S, complete sequence.
Lassa virus segment L, complete sequence.
DISEASE
H00386  
Lassa fever
Evidence UniProt
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Scientific NameMurid betaherpesvirus 8 [TAX:1261657]
LineageViruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Betaherpesvirinae; Muromegalovirus; Muromegalovirus muridbeta8
RefSeq
Murid herpesvirus 8 isolate England, complete genome.
Evidence RefSeq
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Scientific NameRasavirus sp. [TAX:1930508]
LineageViruses; unclassified viruses
RefSeq
Rasavirus sp. isolate 16715_52_2, complete genome.
Evidence RefSeq
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Scientific NameRat associated porprismacovirus 1 [TAX:2170126]
LineageViruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus
RefSeq
Rat associated porprismacovirus 1 isolate KS/11/0577, complete genome.
Evidence RefSeq
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Scientific NameRat bufavirus SY-2015 [TAX:1763507]
LineageViruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Protoparvovirus; Protoparvovirus rodent3
RefSeq
Rat bufavirus SY-2015 isolate 791102, partial genome.
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Scientific NameRat coronavirus [TAX:31632]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus
GenBank
Rat coronavirus isolate 681, complete genome.
Evidence GenBank
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Scientific NameRat coronavirus Parker [TAX:502102]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; Rat coronavirus
RefSeq
Rat coronavirus Parker, complete genome.
Evidence RefSeq
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Scientific Namerat cytomegalovirus strain Maastricht [TAX:79700]
LineageViruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Betaherpesvirinae; Muromegalovirus; Muromegalovirus muridbeta2; Murid betaherpesvirus 2
RefSeq
Rat cytomegalovirus Maastricht, complete genome.
Evidence UniProt
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Scientific NameRat parvovirus NTU1 [TAX:1248250]
LineageViruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Protoparvovirus; unclassified Protoparvovirus
GenBank
Rat parvovirus NTU1, complete genome.
Evidence GenBank
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Scientific NameRat theilovirus 1 [TAX:529419]
LineageViruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Caphthovirinae; Cardiovirus; Cardiovirus B; Theilovirus
GenBank
Rat theilovirus 1, complete genome.
Evidence GenBank
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Laboratory of Chemical Life Science | Kyoto University Bioinfomatics Center | Institute for Chemical Research