Manihot esculenta

Manihot esculenta

Scientific Name	Manihot esculenta [TAX:3983]
Lineage	cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
DBLINKS	KEGG GENOME: T05761

Known viruses (26)

Scientific Name	African cassava mosaic Burkina Faso virus [TAX:2560285]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_055127 African cassava mosaic Burkina Faso virus DNA-B complete genome, isolate BF:Oua:BF127:08. NC_055128 African cassava mosaic Burkina Faso virus DNA-A complete genome, isolate BF:Oua:BF127:08.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 22416906
Authors	Tiendrébéogo F, Lefeuvre P, Hoareau M, Harimalala MA, De Bruyn A, Villemot J, Traoré VS, Konaté G, Traoré AS, Barro N, Reynaud B, Traoré O, Lett JM
Title	Evolution of African cassava mosaic virus by recombination between bipartite and monopartite begomoviruses.
Journal	Virol J. 2012 Mar 14;9:67.
DBLINKS	KEGG BRITE: NC_055127 NC_055128 ICTV: 202206693 ViralZone: family, genus

Scientific Name	African cassava mosaic virus [TAX:10817]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_001467 African cassava mosaic virus isolate West Kenyan 844 segment DNA1, complete sequence. NC_001468 African cassava mosaic virus isolate West Kenyan 844 segment DNA2, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_001467 NC_001468 ICTV: 202203179 ViralZone: family, genus Descriptions of Plant Viruses: 297

Scientific Name	African cassava mosaic virus-[Cameroon] [TAX:222064]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; African cassava mosaic virus
GenBank	AF112352 African cassava mosaic virus-[Cameroon] component A, complete sequence. AF112353 African cassava mosaic virus-[Cameroon] component B, complete sequence.
Evidence	Literature
Reference	PMID: 10640569
Authors	Fondong VN, Pita JS, Rey ME, de Kochko A, Beachy RN, Fauquet CM
Title	Evidence of synergism between African cassava mosaic virus and a new double-recombinant geminivirus infecting cassava in Cameroon.
Journal	J Gen Virol. 2000 Jan;81(Pt 1):287-97.
DBLINKS	ViralZone: family, genus

Scientific Name	Cassava associated gemycircularvirus 1 [TAX:1985374]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus cassa1
RefSeq	NC_023844 Cassava associated gemycircularvirus 1 isolate G14, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_023844 ViralZone: family, genus

Scientific Name	Cassava brown streak virus [TAX:137758]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Ipomovirus
RefSeq	NC_012698 Cassava brown streak virus, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_012698 ICTV: 202204543 ViralZone: genus, family

Scientific Name	Cassava Colombian symptomless virus [TAX:2843917]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Potexvirus
RefSeq	NC_076132 Cassava Colombian symptomless virus isolate CM5460-10 replicase (QKL02_gp1), TGB1 (QKL02_gp2), TGB2 (QKL02_gp3), and coat protein (QKL02_gp4) genes, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076132 ICTV: 202209844 ViralZone: genus, family

Scientific Name	Cassava common mosaic virus [TAX:39046]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Potexvirus
RefSeq	NC_001658 Cassava common mosaic virus, complete genome.
Evidence	Literature
Reference	PMID: 8601791
Authors	Calvert LA, Cuervo MI, Ospina MD, Fauquet CM, Ramirez BC
Title	Characterization of cassava common mosaic virus and a defective RNA species.
Journal	J Gen Virol. 1996 Mar;77 ( Pt 3):525-30.
Comment	"cassava", "Manihot esculenta, Crantz"
DBLINKS	KEGG BRITE: NC_001658 KEGG GENOME: T40252 ICTV: 202202199 ViralZone: genus, family Descriptions of Plant Viruses: 90

Scientific Name	Cassava Ivorian bacilliform virus [TAX:1464778]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Bromoviridae; Anulavirus; unclassified Anulavirus
RefSeq	NC_025482 Cassava Ivorian bacilliform virus strain SCRI-CV1 putative replicase mRNA, complete cds. NC_025483 Cassava Ivorian bacilliform virus strain SCRI-CV1 putative polymerase mRNA, complete cds. NC_025484 Cassava Ivorian bacilliform virus strain SCRI-CV1 putative movement protein and putative coat protein mRNAs, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_025482 NC_025483 NC_025484 ViralZone: genus, family Descriptions of Plant Viruses: 361

Scientific Name	Cassava mosaic Madagascar alphasatellite [TAX:1231298]
Lineage	Viruses; Alphasatellitidae; Geminialphasatellitinae; Colecusatellite
RefSeq	NC_018628 Cassava mosaic Madagascar alphasatellite rep gene for replication associated protein, segment DNA-1, isolate MG:Diana:635A1:2011.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_018628 ICTV: 202205680 ViralZone: family

Scientific Name	Cassava mosaic Madagascar virus [TAX:1125764]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_017004 Cassava mosaic Madagascar virus DNA A, complete genome. NC_017005 Cassava mosaic Madagascar virus DNA B, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_017004 NC_017005 ICTV: 202203202 ViralZone: family, genus

Scientific Name	Cassava satellite virus [TAX:1958957]
Lineage	Viruses; Satellites; RNA satellites
RefSeq	NC_033817 Cassava satellite virus isolate Casatv_Br, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 28428291
Authors	Souza AN, Silva FN, Carvalho CM
Title	Complete Genome Sequence of a Novel Satellite Virus Associated with Cassava Plants.
Journal	Genome Announc. 2017 Apr 20;5(16).
DBLINKS	KEGG BRITE: NC_033817

Scientific Name	Cassava Torrado-like virus [TAX:1427159]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Secoviridae; Torradovirus; unclassified Torradovirus
RefSeq	NC_079069 Cassava Torrado-like virus isolate Yop_12 segment RNA2, complete sequence. NC_079070 Cassava Torrado-like virus isolate Yop_12 segment RNA1, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_079069 NC_079070 ViralZone: family, genus

Scientific Name	Cassava vein mosaic virus [TAX:38062]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Cavemovirus; Cavemovirus venamanihotis
RefSeq	NC_001648 Cassava vein mosaic virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001648 KEGG GENOME: T40253 ViralZone: family, genus Descriptions of Plant Viruses: 413

Scientific Name	Cassava virus C [TAX:561576]
Lineage	Viruses; Riboviria; Orthornavirae; Lenarviricota; Miaviricetes; Ourlivirales; Botourmiaviridae; Ourmiavirus
RefSeq	NC_013111 Cassava virus C. NC_013112 Cassava virus C. NC_013113 Cassava virus C.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_013111 NC_013112 NC_013113 ICTV: 202205356 ViralZone: genus, family

Scientific Name	Cassava virus X [TAX:1977392]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Potexvirus
RefSeq	NC_034375 Cassava virus X isolate Ven164 RNA-dependent RNA polymerase (RdRp), triple gene block protein 1 (TGB1), triple gene block protein 2 (TGB2), and coat protein (CP) genes, complete cds.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 28365210
Authors	Lozano I, Leiva AM, Jimenez J, Fernandez E, Carvajal-Yepes M, Cuervo M, Cuellar WJ
Title	Resolution of cassava-infecting alphaflexiviruses: Molecular and biological characterization of a novel group of potexviruses lacking the TGB3 gene.
Journal	Virus Res. 2017 Sep 15;241:53-61.
DBLINKS	KEGG BRITE: NC_034375 ICTV: 202202200 ViralZone: genus, family

Scientific Name	East African cassava mosaic Cameroon virus [TAX:223262]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_004625 East African cassava mosaic Cameroon virus DNA A, complete sequence. NC_004630 East African cassava mosaic Cameroon virus DNA B, complete sequence.
Evidence	Literature
Reference	PMID: 10640569
Authors	Fondong VN, Pita JS, Rey ME, de Kochko A, Beachy RN, Fauquet CM
Title	Evidence of synergism between African cassava mosaic virus and a new double-recombinant geminivirus infecting cassava in Cameroon.
Journal	J Gen Virol. 2000 Jan;81(Pt 1):287-97.
DBLINKS	KEGG BRITE: NC_004625 NC_004630 ICTV: 202203240 ViralZone: family, genus

Scientific Name	East African cassava mosaic Kenya virus [TAX:393599]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_011583 East African cassava mosaic Kenya virus DNA A, complete genome. NC_011584 East African cassava mosaic Kenya virus DNA B, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_011583 NC_011584 ICTV: 202203241 ViralZone: family, genus

Scientific Name	East African cassava mosaic Malawi virus [TAX:223264]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_022644 East African cassava mosaic Malawi virus clone EACMMV[MA:S8:07]B segment DNA-B, complete sequence. NC_022645 East African cassava mosaic Malawi virus clone EACMMV[MA:07:S4] AV2 (AV2), CP (AV1), REn (AC3), TrAP (AC2), and Rep genes, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_022644 NC_022645 ICTV: 202203242 ViralZone: family, genus

Scientific Name	East African cassava mosaic Malawi virus-Malawi[K] [TAX:223265]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; East African cassava mosaic Malawi virus
RefSeq	NC_038877 East African cassava mosaic Malawi virus-Malawi[K] AV1, AV2 and AC1 genes, (isolate MK).
Evidence	Literature
Reference	PMID: 9820161
Authors	Zhou X, Robinson DJ, Harrison BD
Title	Types of variation in DNA-A among isolates of East African cassava mosaic virus from Kenya, Malawi and Tanzania.
Journal	J Gen Virol. 1998 Nov;79 ( Pt 11):2835-40.
DBLINKS	KEGG BRITE: NC_038877 ViralZone: family, genus

Scientific Name	East African cassava mosaic virus [TAX:62079]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_004674 East African cassava mosaic virus DNA A, complete sequence. NC_004676 East African cassava mosaic virus DNA B, complete sequence.
Evidence	Literature
Reference	PMID: 11172108
Authors	Pita JS, Fondong VN, Sangaré A, Otim-Nape GW, Ogwal S, Fauquet CM
Title	Recombination, pseudorecombination and synergism of geminiviruses are determinant keys to the epidemic of severe cassava mosaic disease in Uganda.
Journal	J Gen Virol. 2001 Mar;82(Pt 3):655-65.
DBLINKS	KEGG BRITE: NC_004674 NC_004676 ICTV: 202203243 ViralZone: family, genus

Scientific Name	East African cassava mosaic virus-Uganda BFA/2008 [TAX:581119]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; East African cassava mosaic virus
GenBank	FM877474 East African cassava mosaic virus-Uganda BFA/2008 complete genome, isolate Burkina Faso-Koubri-2008.
Evidence	GenBank
DBLINKS	ViralZone: family, genus

Scientific Name	East African cassava mosaic Zanzibar virus [TAX:223275]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_004655 East African cassava mosaic Zanzibar virus DNA-A, complete genome. NC_004656 East African cassava mosaic Zanzibar virus DNA B, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_004655 NC_004656 ICTV: 202203244 ViralZone: family, genus

Scientific Name	Indian cassava mosaic virus [TAX:31600]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_001932 Indian cassava mosaic virus DNA A, complete sequence. NC_001933 Indian cassava mosaic virus DNA B, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001932 NC_001933 KEGG GENOME: T40254 ICTV: 202203260 ViralZone: family, genus Plant Viruses Online: 173

Scientific Name	South African cassava mosaic virus [TAX:63723]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus
RefSeq	NC_003803 South African cassava mosaic virus DNA A, complete sequence. NC_003804 South African cassava mosaic virus DNA B, complete sequence.
Evidence	Literature
Reference	PMID: 11125158
Authors	Berrie LC, Rybicki EP, Rey ME
Title	Complete nucleotide sequence and host range of South African cassava mosaic virus: further evidence for recombination amongst begomoviruses.
Journal	J Gen Virol. 2001 Jan;82(Pt 1):53-8.
DBLINKS	KEGG BRITE: NC_003803 NC_003804 ICTV: 202203365 ViralZone: family, genus

Scientific Name	Sri Lankan cassava mosaic virus - [Ker20] [TAX:475454]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; Sri Lankan cassava mosaic virus
GenBank	AJ579307 Sri Lankan cassava mosaic virus - [Ker20] segment A, isolate Adivaram. AJ579308 Sri Lankan cassava mosaic virus - [Ker20] segment B, isolate Adivaram.
Evidence	Literature
Reference	PMID: 15986172
Authors	Dutt N, Briddon RW, Dasgupta I
Title	Identification of a second begomovirus, Sri Lankan cassava mosaic virus, causing cassava mosaic disease in India.
Journal	Arch Virol. 2005 Oct;150(10):2101-8.
DBLINKS	ViralZone: family, genus

Scientific Name	Ugandan cassava brown streak virus [TAX:946046]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; Patatavirales; Potyviridae; Ipomovirus
RefSeq	NC_014791 Ugandan cassava brown streak virus, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_014791 ICTV: 202204548 ViralZone: genus, family