Equus caballus

Scientific Name	Equus caballus [TAX:9796]
Lineage	cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
DBLINKS	KEGG GENOME: T01058

Known viruses (66)

Scientific Name	African horse sickness virus [TAX:40050]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Sedoreoviridae; Orbivirus
RefSeq	NC_005996 African horsesickness virus segment 2, complete genome. NC_006009 African horsesickness virus segment 10, complete sequence. NC_006011 African horsesickness virus segment 7, complete sequence. NC_006012 African horsesickness virus segment 4, complete sequence. NC_006016 African horsesickness virus segment 8, complete sequence. NC_006017 African horsesickness virus segment 3, complete sequence. NC_006018 African horsesickness virus segment 6, complete sequence. NC_006019 African horsesickness virus chromosome segment 9, complete genome. NC_006020 African horsesickness virus. NC_006021 African horsesickness virus segment 1, complete genome.
Evidence	UniProt
Evidence	Literature
Reference	PMID: 15236676
Authors	Mellor PS, Hamblin C
Title	African horse sickness.
Journal	Vet Res. 2004 Jul-Aug;35(4):445-66.
DBLINKS	KEGG BRITE: NC_005996 NC_006009 NC_006011 NC_006012 NC_006016 NC_006017 NC_006018 NC_006019 NC_006020 NC_006021 ICTV: 202204878 ViralZone: family, genus

Scientific Name	Almpiwar virus [TAX:318843]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Sripuvirus; Sripuvirus almpiwar
RefSeq	NC_025391 Almpiwar virus isolate MRM4059, complete genome.
Evidence	Literature
Reference	McAllister, J., Gauci, P. J., Mitchell, I. R., Boyle, D. B., Bulach, D. M., Weir, R. P., ... & Gubala, A. J. (2014). Genomic characterisation of Almpiwar virus, Harrison Dam virus and Walkabout Creek virus; three novel rhabdoviruses from northern Australia. Virology Reports, 3, 1-17.
Comment	Laboratory host: Culex quinquefasciatus Culture cell line: BSR cells
DBLINKS	KEGG BRITE: NC_025391 ViralZone: family, genus

Scientific Name	Betapolyomavirus equi [TAX:1891761]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Betapolyomavirus
RefSeq	NC_017982 Equus caballus polyomavirus 1 isolate CU03, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_017982 ICTV: 202204458 ViralZone: genus, family

Scientific Name	Borna disease virus 2 [TAX:1714622]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Bornaviridae; Orthobornavirus; Orthobornavirus bornaense
RefSeq	NC_030692 Borna disease virus 2, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 11602780
Authors	Pleschka S, Staeheli P, Kolodziejek J, Richt JA, Nowotny N, Schwemmle M
Title	Conservation of coding potential and terminal sequences in four different isolates of Borna disease virus.
Journal	J Gen Virol. 2001 Nov;82(Pt 11):2681-2690.
Comment	Culture cell line: Vero cells
DBLINKS	KEGG BRITE: NC_030692 ViralZone: family, genus

Scientific Name	Cocal virus [TAX:50713]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Vesiculovirus; Vesiculovirus cocal
RefSeq	NC_028255 Cocal virus Indiana 2, complete genome.
Evidence	UniProt
Evidence	Literature
Reference	PMID: 18512001
Authors	Pauszek SJ, Allende R, Rodriguez LL
Title	Characterization of the full-length genomic sequences of vesicular stomatitis Cocal and Alagoas viruses.
Journal	Arch Virol. 2008;153(7):1353-7.
Comment	Culture cell line: BHK-21 cells
DBLINKS	KEGG BRITE: NC_028255 ViralZone: family, genus

Scientific Name	Cowpox virus [TAX:10243]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Orthopoxvirus
RefSeq	NC_003663 Cowpox virus, complete genome.
DISEASE	H02351 Cowpox
Evidence	Literature
Reference	PMID: 19828265
Authors	Essbauer S, Pfeffer M, Meyer H
Title	Zoonotic poxviruses.
Journal	Vet Microbiol. 2010 Jan 27;140(3-4):229-36.
DBLINKS	KEGG BRITE: NC_003663 KEGG GENOME: T40359 ICTV: 202204769 ViralZone: genus, family

Scientific Name	Cyclovirus Equ1 [TAX:1673638]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Cyclovirus; Cyclovirus caballo
RefSeq	NC_038411 Cyclovirus Equ1, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 26044792
Authors	Li L, Giannitti F, Low J, Keyes C, Ullmann LS, Deng X, Aleman M, Pesavento PA, Pusterla N, Delwart E
Title	Exploring the virome of diseased horses.
Journal	J Gen Virol. 2015 Sep;96(9):2721-2733.
DBLINKS	KEGG BRITE: NC_038411 ViralZone: genus, family

Scientific Name	Eastern equine encephalitis virus [TAX:11021]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Togaviridae; Alphavirus
RefSeq	NC_003899 Eastern equine encephalitis virus, complete genome.
DISEASE	H01535 Eastern equine encephalitis
Evidence	Literature
Reference	PMID: 2574935
Authors	Scott TW, Weaver SC
Title	Eastern equine encephalomyelitis virus: epidemiology and evolution of mosquito transmission.
Journal	Adv Virus Res. 1989;37:277-328.
DBLINKS	KEGG BRITE: NC_003899 KEGG GENOME: T40054 ICTV: 202205088 ViralZone: genus, family

Scientific Name	Eqcopivirus EqCoPV_8 [TAX:2653508]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; unclassified Parvoviridae
RefSeq	NC_077035 Eqcopivirus EqCoPV_8, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_077035 ViralZone: family

Scientific Name	Equid alphaherpesvirus 1 [TAX:10326]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Varicellovirus; Varicellovirus equidalpha1
RefSeq	NC_001491 Equid herpesvirus 1, complete genome.
Evidence	RefSeq
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001491 ViralZone: family, genus

Scientific Name	Equid alphaherpesvirus 3 [TAX:80341]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Varicellovirus; Varicellovirus equidalpha3
RefSeq	NC_024771 Equid herpesvirus 3 strain AR/2007/C3A, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_024771 ViralZone: family, genus

Scientific Name	Equid alphaherpesvirus 4 [TAX:10331]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Varicellovirus; Varicellovirus equidalpha4
RefSeq	NC_001844 Equid herpesvirus 4, complete genome.
Evidence	RefSeq
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001844 ViralZone: family, genus

Scientific Name	Equid alphaherpesvirus 8 [TAX:39637]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Varicellovirus; Varicellovirus equidalpha8
RefSeq	NC_017826 Equid herpesvirus 8, complete genome. NC_075566 Equid alphaherpesvirus 8 strain EHV-8/IR/2003/19, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_017826 NC_075566 ViralZone: family, genus

Scientific Name	Equid gammaherpesvirus 2 [TAX:12657]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Gammaherpesvirinae; Percavirus; Percavirus equidgamma2
RefSeq	NC_001650 Equid herpesvirus 2 strain 86/67, complete genome.
Evidence	RefSeq
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001650 ViralZone: family, genus

Scientific Name	Equid gammaherpesvirus 5 [TAX:10371]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Gammaherpesvirinae; Percavirus; Percavirus equidgamma5
RefSeq	NC_026421 Equid herpesvirus 5 strain 2-141/67, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_026421 ViralZone: family, genus

Scientific Name	Equine adenovirus 1 [TAX:46916]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Mastadenovirus; Equine mastadenovirus A
RefSeq	NC_030792 Equine adenovirus 1 strain M1, complete genome.
Evidence	RefSeq
Evidence	UniProt
Evidence	Literature
Reference	PMID: 21924564
Authors	Cavanagh HM, Mahony TJ, Vanniasinkam T
Title	Genetic characterization of equine adenovirus type 1.
Journal	Vet Microbiol. 2012 Feb 24;155(1):33-7.
Comment	Culture cell line: primary equine kidney cells
DBLINKS	KEGG BRITE: NC_030792 ViralZone: genus, family

Scientific Name	Equine adenovirus 2 [TAX:67603]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Mastadenovirus; Equine mastadenovirus B
RefSeq	NC_027705 Equine adenovirus 2 isolate EAdV2.385/75.9, complete genome.
Evidence	RefSeq
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_027705 ViralZone: genus, family

Scientific Name	Equine circovirus 1 [TAX:2834422]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus; unclassified Circovirus
RefSeq	NC_077115 Equine circovirus 1 strain Charaf, complete genome.
DBLINKS	KEGG BRITE: NC_077115 ViralZone: family, genus

Scientific Name	Equine coronavirus [TAX:136187]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1
GenBank	EF446615 Equine coronavirus strain NC99, complete genome.
DBLINKS	ViralZone: genus, family

Scientific Name	Equine encephalosis virus [TAX:201490]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Sedoreoviridae; Orbivirus
RefSeq	NC_038574 Equine encephalosis virus isolate HS103/06 VP1 gene, complete cds. NC_038575 Equine encephalosis virus isolate HS103/06 VP3 gene, complete cds. NC_038576 Equine encephalosis virus isolate HS103/06 NS1 gene, complete cds. NC_038577 Equine encephalosis virus isolate HS103/06 VP5 gene, complete cds. NC_038578 Equine encephalosis virus isolate HS103/06 VP7 gene, complete cds. NC_038579 Equine encephalosis virus isolate HS103/06 VP6 gene, complete cds. NC_038580 Equine encephalosis virus isolate HS103/06 NS3 gene, complete cds. NC_038581 Equine encephalosis virus isolate HS103/06 VP4 gene, complete cds. NC_038582 Equine encephalosis virus isolate HS103/06 VP2 gene, complete cds. NC_038583 Equine encephalosis virus isolate HS103/06 NS2 gene, complete cds.
Evidence	Literature
Reference	PMID: 19264638
Authors	Potgieter AC, Page NA, Liebenberg J, Wright IM, Landt O, van Dijk AA
Title	Improved strategies for sequence-independent amplification and sequencing of viral double-stranded RNA genomes.
Journal	J Gen Virol. 2009 Jun;90(Pt 6):1423-1432.
Comment	Culture cell line:BHK, Vero
DBLINKS	KEGG BRITE: NC_038574 NC_038575 NC_038576 NC_038577 NC_038578 NC_038579 NC_038580 NC_038581 NC_038582 NC_038583 ICTV: 202204885 ViralZone: family, genus

Scientific Name	Equine foamy virus [TAX:109270]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Spumaretrovirinae; Equispumavirus
RefSeq	NC_002201 Equine foamy virus, complete genome.
Evidence	Literature
Reference	PMID: 10756018
Authors	Tobaly-Tapiero J, Bittoun P, Neves M, Guillemin MC, Lecellier CH, Puvion-Dutilleul F, Gicquel B, Zientara S, Giron ML, de Thé H, Saïb A
Title	Isolation and characterization of an equine foamy virus.
Journal	J Virol. 2000 May;74(9):4064-73.
DBLINKS	KEGG BRITE: NC_002201 ICTV: 202205040 ViralZone: family, genus

Scientific Name	equine foamy virus Equus caballus [TAX:2849477]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Spumaretrovirinae; Equispumavirus; Equine foamy virus
GenBank	AF201902 Equine foamy virus Equus caballus, complete genome.
Evidence	Literature
Reference	PMID: 10756018
Authors	Tobaly-Tapiero J, Bittoun P, Neves M, Guillemin MC, Lecellier CH, Puvion-Dutilleul F, Gicquel B, Zientara S, Giron ML, de Thé H, Saïb A
Title	Isolation and characterization of an equine foamy virus.
Journal	J Virol. 2000 May;74(9):4064-73.
DBLINKS	ViralZone: family, genus

Scientific Name	Equine hepacivirus JPN3/JAPAN/2013 [TAX:1416349]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Hepacivirus; unclassified Hepacivirus; Equine hepacivirus
RefSeq	NC_024889 Equine hepacivirus JPN3/JAPAN/2013 polyprotein (POLY) gene, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_024889 ViralZone: family, genus

Scientific Name	Equine infectious anemia virus [TAX:11665]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
RefSeq	NC_001450 Equine infectious anemia virus, complete genome. NC_076947 Equine infectious anemia virus clone pSPEIAV19, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001450 NC_076947 ICTV: 202205028 ViralZone: family, genus

Scientific Name	Equine parvovirus H [TAX:2079554]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; unclassified Parvovirinae
RefSeq	NC_040652 Equine parvovirus H strain D14 nonstructural protein and capsid protein genes, complete cds. NC_076001 Equine parvovirus H nonstructural protein (QKJ67_gp1) and virion protein (QKJ67_gp2) genes, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_040652 NC_076001 ViralZone: family

Scientific Name	Equine pegivirus 1 [TAX:1307803]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Pegivirus; Pegivirus caballi; Equine pegivirus
RefSeq	NC_020902 Equine Pegivirus 1 isolate C0035, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_020902 ViralZone: family, genus

Scientific Name	Equine protoparvovirus [TAX:2860269]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Protoparvovirus; unclassified Protoparvovirus
RefSeq	NC_077112 Equine protoparvovirus isolate EqPV-P4619, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_077112 ViralZone: family, genus

Scientific Name	Equine rhinitis A virus [TAX:47000]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Caphthovirinae; Aphthovirus
RefSeq	NC_039209 Equine rhinitis A virus strain PERV-1, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_039209 ICTV: 202201960 ViralZone: family, genus

Scientific Name	Equine rhinitis B virus 1 [TAX:47001]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Caphthovirinae; Erbovirus; Erbovirus A
RefSeq	NC_003983 Equine rhinitis B virus 1, complete genome.
Evidence	RefSeq
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003983 ViralZone: family, genus

Scientific Name	Equine rhinitis B virus 2 [TAX:168014]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Caphthovirinae; Erbovirus; Erbovirus A
GenBank	AF361253 Equine rhinovirus 3 strain P313/75, complete genome.
Evidence	GenBank
Evidence	Literature
Reference	PMID: 11602775
Authors	Huang JA, Ficorilli N, Hartley CA, Wilcox RS, Weiss M, Studdert MJ
Title	Equine rhinitis B virus: a new serotype.
Journal	J Gen Virol. 2001 Nov;82(Pt 11):2641-2645.
Comment	Culture cell line: RK13 cells
DBLINKS	ViralZone: family, genus

Scientific Name	Equus caballus papillomavirus 1 [TAX:333920]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Zetapapillomavirus; Zetapapillomavirus 1
RefSeq	NC_003748 Equus caballus papillomavirus type 1, complete genome.
Evidence	RefSeq
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_003748 ViralZone: family, genus

Scientific Name	Equus caballus papillomavirus 2 [TAX:526413]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Dyoiotapapillomavirus; Dyoiotapapillomavirus 1
RefSeq	NC_012123 Equine papillomavirus 2, complete genome.
Evidence	Literature
Reference	PMID: 21039805
Authors	Scase T, Brandt S, Kainzbauer C, Sykora S, Bijmholt S, Hughes K, Sharpe S, Foote A
Title	Equus caballus papillomavirus-2 (EcPV-2): an infectious cause for equine genital cancer?
Journal	Equine Vet J. 2010 Nov;42(8):738-45.
DBLINKS	KEGG BRITE: NC_012123 ViralZone: family, genus

Scientific Name	Equus caballus papillomavirus 3 [TAX:940834]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Dyoiotapapillomavirus; Dyoiotapapillomavirus 1
RefSeq	NC_017862 Equine papillomavirus 3, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_017862 ViralZone: family, genus

Scientific Name	Equus caballus papillomavirus 4 [TAX:1235428]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Dyoiotapapillomavirus; Dyoiotapapillomavirus 2
RefSeq	NC_020085 Equus ferus caballus papillomavirus type 4, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_020085 ViralZone: family, genus

Scientific Name	Equus caballus papillomavirus 5 [TAX:1235429]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Dyoiotapapillomavirus; Dyoiotapapillomavirus 2
RefSeq	NC_020084 Equus ferus caballus papillomavirus type 5, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_020084 ViralZone: family, genus

Scientific Name	Equus caballus papillomavirus 6 [TAX:1235427]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Dyorhopapillomavirus; Dyorhopapillomavirus 1
RefSeq	NC_020500 Equine papillomavirus type 6, complete genome.
Evidence	Literature
Reference	PMID: 23486670
Authors	Lange CE, Vetsch E, Ackermann M, Favrot C, Tobler K
Title	Four novel papillomavirus sequences support a broad diversity among equine papillomaviruses.
Journal	J Gen Virol. 2013 Jun;94(Pt 6):1365-1372.
DBLINKS	KEGG BRITE: NC_020500 ViralZone: family, genus

Scientific Name	Equus caballus papillomavirus 7 [TAX:1235430]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Dyorhopapillomavirus; Dyorhopapillomavirus 1
RefSeq	NC_020501 Equus ferus caballus papillomavirus type 7, complete genome.
Evidence	Literature
Reference	PMID: 23486670
Authors	Lange CE, Vetsch E, Ackermann M, Favrot C, Tobler K
Title	Four novel papillomavirus sequences support a broad diversity among equine papillomaviruses.
Journal	J Gen Virol. 2013 Jun;94(Pt 6):1365-1372.
DBLINKS	KEGG BRITE: NC_020501 ViralZone: family, genus

Scientific Name	Equus caballus papillomavirus 8 [TAX:1912759]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Treiskappapapillomavirus; Treiskappapapillomavirus 1
RefSeq	NC_031756 Equus caballus papillomavirus 8 strain NCSU, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 23486670
Authors	Lange CE, Vetsch E, Ackermann M, Favrot C, Tobler K
Title	Four novel papillomavirus sequences support a broad diversity among equine papillomaviruses.
Journal	J Gen Virol. 2013 Jun;94(Pt 6):1365-1372.
DBLINKS	KEGG BRITE: NC_031756 ViralZone: family

Scientific Name	Heartland virus [TAX:1216928]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Phenuiviridae; Bandavirus; Bandavirus heartlandense
RefSeq	NC_024494 Heartland virus isolate Patient1 segment M, complete sequence. NC_024495 Heartland virus isolate Patient1 segment L, complete sequence. NC_024496 Heartland virus isolate Patient1 segment S, complete sequence. NC_078062 Heartland virus strain TN segment S nonstructural protein (NSs) and nucleocapsid protein (N) genes, complete cds. NC_078063 Heartland virus strain TN segment M polyprotein gene, complete cds. NC_078064 Heartland virus strain TN segment L polymerase gene, complete cds.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_024494 NC_024495 NC_024496 NC_078062 NC_078063 NC_078064 ViralZone: family

Scientific Name	Henipavirus hendraense [TAX:3052223]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Orthoparamyxovirinae; Henipavirus
RefSeq	NC_001906 Hendra virus, complete genome.
DISEASE	H01538 Hendra virus infection
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001906 KEGG GENOME: T40046 ICTV: 202201609 ViralZone: family, genus

Scientific Name	Hervey virus [TAX:1554500]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Rubulavirinae; Pararubulavirus; Pararubulavirus herveyense
RefSeq	NC_055459 UNVERIFIED: Hervey virus isolate BO6 genomic sequence.
Evidence	Literature
Reference	PMID: 29390028
Authors	Kohl C, Tachedjian M, Todd S, Monaghan P, Boyd V, Marsh GA, Crameri G, Field H, Kurth A, Smith I, Wang LF
Title	Hervey virus: Study on co-circulation with Henipaviruses in Pteropid bats within their distribution range from Australia to Africa.
Journal	PLoS One. 2018;13(2):e0191933.
Comment	Culture cell line: Vero E6, Bovine kidney, PaKi, PaHe, Equine kidney, CRFK and LoVo cells
DBLINKS	KEGG BRITE: NC_055459 ViralZone: family, genus

Scientific Name	Horse parvovirus CSF [TAX:1673640]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; unclassified Parvoviridae
RefSeq	NC_077119 Horse parvovirus CSF strain EqPV-CSF Ky1 NS1 (QKV00_gp1) and VP1 (QKV00_gp2) genes, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_077119 ViralZone: family

Scientific Name	Horsepox virus [TAX:397342]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Orthopoxvirus; Vaccinia virus
RefSeq	NC_066642 Horsepox virus, complete genome.
Evidence	UniProt
Evidence	Literature
Reference	PMID: 16940536
Authors	Tulman ER, Delhon G, Afonso CL, Lu Z, Zsak L, Sandybaev NT, Kerembekova UZ, Zaitsev VL, Kutish GF, Rock DL
Title	Genome of horsepox virus.
Journal	J Virol. 2006 Sep;80(18):9244-58.
Comment	Culture cell line: sheep kidney cells
Evidence	Literature
Reference	PMID: 34253028
Authors	Senkevich TG, Yutin N, Wolf YI, Koonin EV, Moss B
Title	Ancient Gene Capture and Recent Gene Loss Shape the Evolution of Orthopoxvirus-Host Interaction Genes.
Journal	mBio. 2021 Aug 31;12(4):e0149521.
Comment	Culture cell line: sheep kidney cells
Evidence	Literature
Reference	PMID: 30660046
Authors	Zmasek CM, Knipe DM, Pellett PE, Scheuermann RH
Title	Classification of human Herpesviridae proteins using Domain-architecture Aware Inference of Orthologs (DAIO).
Journal	Virology. 2019 Mar;529:29-42.
Comment	Culture cell line: sheep kidney cells
DBLINKS	KEGG BRITE: NC_066642 ViralZone: genus, family

Scientific Name	Japanese encephalitis virus [TAX:11072]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Orthoflavivirus; Orthoflavivirus japonicum
RefSeq	NC_001437 Japanese encephalitis virus, genome.
DISEASE	H01533 Japanese encephalitis
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001437 KEGG GENOME: T40052 ViralZone: family, genus

Scientific Name	Klebsiella phage pJN2-26 [TAX:2873443]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; unclassified Caudoviricetes
GenBank	MZ779062 Klebsiella phage pJN2-26 strain Klebsiella pneumoniae ST4656 isolate JN2-26, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: class, class, class

Scientific Name	Louping ill virus [TAX:11086]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Orthoflavivirus; Orthoflavivirus loupingi
RefSeq	NC_001809 Louping ill virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001809 KEGG GENOME: T40112 ViralZone: family, genus

Scientific Name	Lyssavirus rabies [TAX:11292]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Lyssavirus
RefSeq	NC_001542 Rabies virus, complete genome.
DISEASE	H00377 Rabies
Evidence	Literature
Reference	PMID: 15297743
Authors	Sato G, Itou T, Shoji Y, Miura Y, Mikami T, Ito M, Kurane I, Samara SI, Carvalho AA, Nociti DP, Ito FH, Sakai T
Title	Genetic and phylogenetic analysis of glycoprotein of rabies virus isolated from several species in Brazil.
Journal	J Vet Med Sci. 2004 Jul;66(7):747-53.
DBLINKS	KEGG BRITE: NC_001542 KEGG GENOME: T40022 ICTV: 202201733 ViralZone: family, genus

Scientific Name	Mucambo virus [TAX:60875]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Togaviridae; Alphavirus
RefSeq	NC_038672 Mucambo virus strain Mucambo BeAn 8, complete genome.
Evidence	Literature
Reference	PMID: 14205893
Authors	SHOPE RE, CAUSEY OR, DE ANDRADE AH
Title	THE VENEZUELAN EQUINE ENCEPHALOMYELITIS COMPLEX OF GROUP A ARTHROPOD-BORNE VIRUSES, INCLUDING MUCAMBO AND PIXUNA FROM THE AMAZON REGION OF BRAZIL.
Journal	Am J Trop Med Hyg. 1964 Sep;13:723-7.
Evidence	Literature
Reference	PMID: 9886206
Authors	Kinney RM, Pfeffer M, Tsuchiya KR, Chang GJ, Roehrig JT
Title	Nucleotide sequences of the 26S mRNAs of the viruses defining the Venezuelan equine encephalitis antigenic complex.
Journal	Am J Trop Med Hyg. 1998 Dec;59(6):952-64.
DBLINKS	KEGG BRITE: NC_038672 ICTV: 202205098 ViralZone: genus, family

Scientific Name	Ness Ziona virus [TAX:2544873]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Peribunyaviridae; Orthobunyavirus; Orthobunyavirus nesszionaense
RefSeq	NC_079116 Ness Ziona virus isolate H234A segment M, complete sequence. NC_079117 Ness Ziona virus isolate H234A segment L, complete sequence. NC_079118 Ness Ziona virus isolate H234A segment S, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 30833612
Authors	Shifman O, Cohen-Gihon I, Beth-Din A, Zvi A, Laskar O, Paran N, Epstein E, Stein D, Dorozko M, Wolf D, Yitzhaki S, Shapira SC, Melamed S, Israeli O
Title	Identification and genetic characterization of a novel Orthobunyavirus species by a straightforward high-throughput sequencing-based approach.
Journal	Sci Rep. 2019 Mar 4;9(1):3398.
DBLINKS	KEGG BRITE: NC_079116 NC_079117 NC_079118 ViralZone: family, genus

Scientific Name	Non-primate hepacivirus NZP1 [TAX:1605403]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Hepacivirus; Hepacivirus equi
RefSeq	NC_038425 Non-primate hepacivirus NZP1 polyprotein (POLY) gene, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_038425 ViralZone: family, genus

Scientific Name	Orthobunyavirus shuniense [TAX:3052440]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Peribunyaviridae; Orthobunyavirus
RefSeq	NC_043697 Shuni virus strain SAE1809 polyprotein gene, complete cds. NC_043698 Shuni virus strain SAE1809 nucleocapsid and nonstructural protein genes, complete cds. NC_043699 Shuni virus strain SAE1809 RNA-dependent RNA polymerase gene, complete cds.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 24957652
Authors	van Eeden C, Harders F, Kortekaas J, Bossers A, Venter M
Title	Genomic and phylogenetic characterization of Shuni virus.
Journal	Arch Virol. 2014 Nov;159(11):2883-92.
DBLINKS	KEGG BRITE: NC_043697 NC_043698 NC_043699 ICTV: 202200128 ViralZone: family, genus

Scientific Name	Peaton virus [TAX:159151]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Peribunyaviridae; Orthobunyavirus; Orthobunyavirus peachesterense
RefSeq	NC_043549 Peaton virus N and NSs genes, segment S, genomic RNA, isolate CSIRO 110. NC_043550 Peaton virus RdRp gene for RNA-dependent RNA polymerase, segment L, genomic RNA, isolate CSIRO 110. NC_043551 Peaton virus Gn-Gc-NSm gene for M polyprotein, segment M, genomic RNA, isolate CSIRO 110.
Evidence	Literature
Reference	PMID: 7436869
Authors	St George TD, Standfast HA, Cybinski DH, Filippich C, Carley JG
Title	Peaton virus: a new Simbu group arbovirus isolated from cattle and Culicoides brevitarsis in Australia.
Journal	Aust J Biol Sci. 1980 May;33(2):235-43.
Comment	Culture cell line: BHK21 cells Culture cell line: BHK21 cells
DBLINKS	KEGG BRITE: NC_043549 NC_043550 NC_043551 ViralZone: family, genus

Scientific Name	Peruvian horse sickness virus [TAX:356862]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Sedoreoviridae; Orbivirus
RefSeq	NC_007748 Peruvian horse sickness virus segment 1, complete genome. NC_007749 Peruvian horse sickness virus segment 2, complete genome. NC_007750 Peruvian horse sickness virus segment 3, complete genome. NC_007751 Peruvian horse sickness virus segment 4, complete genome. NC_007752 Peruvian horse sickness virus segment 6, complete genome. NC_007753 Peruvian horse sickness virus segment 9, complete genome. NC_007754 Peruvian horse sickness virus segment 8, complete genome. NC_007755 Peruvian horse sickness virus segment 5, complete genome. NC_007756 Peruvian horse sickness virus segment 7, complete genome. NC_007757 Peruvian horse sickness virus segment 10, complete genome.
Evidence	Literature
Reference	PMID: 19766284
Authors	Attoui H, Mendez-Lopez MR, Rao S, Hurtado-Alendes A, Lizaraso-Caparo F, Jaafar FM, Samuel AR, Belhouchet M, Pritchard LI, Melville L, Weir RP, Hyatt AD, Davis SS, Lunt R, Calisher CH, Tesh RB, Fujita R, Mertens PP
Title	Peruvian horse sickness virus and Yunnan orbivirus, isolated from vertebrates and mosquitoes in Peru and Australia.
Journal	Virology. 2009 Nov 25;394(2):298-310.
DBLINKS	KEGG BRITE: NC_007748 NC_007749 NC_007750 NC_007751 NC_007752 NC_007753 NC_007754 NC_007755 NC_007756 NC_007757 ICTV: 202204892 ViralZone: family, genus

Scientific Name	Picobirnavirus Equ3 [TAX:1673646]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Picobirnaviridae; Picobirnavirus; unclassified Picobirnavirus
RefSeq	NC_078097 Picobirnavirus Equ3 segment 1, complete sequence. NC_078098 Picobirnavirus Equ3 segment 2, complete sequence.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_078097 NC_078098 ViralZone: family

Scientific Name	Rio Grande virus [TAX:629740]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Phenuiviridae; Phlebovirus; Phlebovirus riograndense
RefSeq	NC_055309 Rio Grande virus isolate TBM3-204 segment L, complete sequence. NC_055310 Rio Grande virus isolate TBM3-204 segment S, complete sequence. NC_055311 Rio Grande virus isolate TBM3-204 segment M, complete sequence.
Evidence	Literature
Reference	PMID: 34578299
Authors	Szymczak MS, Reeves WK, Miller MM
Title	Further Characterization of Rio Grande Virus and Potential for Cross Reactivity with Rift Valley Fever Virus Assays.
Journal	Viruses. 2021 Aug 30;13(9).
Comment	Culture cell line: Vero 76
DBLINKS	KEGG BRITE: NC_055309 NC_055310 NC_055311 ViralZone: family, genus

Scientific Name	Sagiyama virus [TAX:59303]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Togaviridae; Alphavirus; Getah virus
GenBank	AB032553 Sagiyama virus genomic RNA, complete genome.
Evidence	UniProt
DBLINKS	ViralZone: genus, family

Scientific Name	Salem virus [TAX:120499]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Orthoparamyxovirinae; Salemvirus; Salemvirus salemense
RefSeq	NC_025386 Salem virus, complete genome.
Evidence	Literature
Reference	PMID: 10793001
Authors	Renshaw RW, Glaser AL, Van Campen H, Weiland F, Dubovi EJ
Title	Identification and phylogenetic comparison of Salem virus, a novel paramyxovirus of horses.
Journal	Virology. 2000 May 10;270(2):417-29.
DBLINKS	KEGG BRITE: NC_025386 ViralZone: family, genus

Scientific Name	Snowshoe hare virus [TAX:11580]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Peribunyaviridae; Orthobunyavirus; Orthobunyavirus khatangaense
RefSeq	NC_055196 Snowshoe hare virus L polyprotein (L) gene, complete cds. NC_055197 Snowshoe hare virus segment M G1/G2 membrane polyprotein gene, complete cds. NC_055198 Snowshoe hare virus segment small, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_055196 NC_055197 NC_055198 ViralZone: family, genus

Scientific Name	Stratford virus [TAX:44027]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Orthoflavivirus; Orthoflavivirus kokoberaorum; Kokobera virus
GenBank	KM225263 Stratford virus strain C338, complete genome.
Evidence	Literature
Reference	PMID: 25237018
Authors	Warrilow D, Hall-Mendelin S, Hobson-Peters J, Prow NA, Allcock R, Hall RA
Title	Complete coding sequences of three members of the kokobera group of flaviviruses.
Journal	Genome Announc. 2014 Sep 18;2(5).
DBLINKS	ViralZone: family, genus

Scientific Name	Theiler's disease-associated virus [TAX:1307119]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Pegivirus; Pegivirus equi
RefSeq	NC_038433 Theiler's disease-associated virus isolate HorseA1_serum, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_038433 ViralZone: family, genus

Scientific Name	Torque teno equus virus 1 [TAX:1673633]
Lineage	Viruses; Anelloviridae; Mutorquevirus; Mutorquevirus equid1
RefSeq	NC_040668 Torque teno equus virus 1, complete genome.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 26044792
Authors	Li L, Giannitti F, Low J, Keyes C, Ullmann LS, Deng X, Aleman M, Pesavento PA, Pusterla N, Delwart E
Title	Exploring the virome of diseased horses.
Journal	J Gen Virol. 2015 Sep;96(9):2721-2733.
DBLINKS	KEGG BRITE: NC_040668 ViralZone: family

Scientific Name	Torque teno equus virus 2 [TAX:2834153]
Lineage	Viruses; Anelloviridae; Mutorquevirus; Mutorquevirus equid2
RefSeq	NC_076942 Torque teno equus virus 2 strain Alberta/2018, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076942 ViralZone: family

Scientific Name	Una virus [TAX:59304]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Togaviridae; Alphavirus
RefSeq	NC_043403 Una virus non structural polyprotein gene, partial cds; and structural polyprotein gene, complete cds.
Evidence	Literature
Reference	PMID: 12754579
Authors	Diaz LA, Spinsanti LI, Almiron WR, Contigiani MS
Title	UNA virus: first report of human infection in Argentina.
Journal	Rev Inst Med Trop Sao Paulo. 2003 Mar-Apr;45(2):109-10.
DBLINKS	KEGG BRITE: NC_043403 ICTV: 202205110 ViralZone: genus, family

Scientific Name	Venezuelan equine encephalitis virus [TAX:11036]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Togaviridae; Alphavirus
RefSeq	NC_001449 Venezuelan equine encephalitis virus, complete genome. NC_075022 Venezuelan equine encephalitis virus, complete genome.
DISEASE	H01547 Venezuelan equine encephalitis
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001449 NC_075022 KEGG GENOME: T40028 ICTV: 202205111 ViralZone: genus, family

Scientific Name	Vesicular stomatitis Indiana virus [TAX:11277]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Vesiculovirus; Vesiculovirus indiana
RefSeq	NC_001560 Vesicular stomatitis Indiana virus, complete genome. NC_038236 Vesicular stomatitis Indiana virus strain 98COE, complete genome.
Evidence	RefSeq
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001560 NC_038236 ViralZone: family, genus

Scientific Name	Western equine encephalitis virus [TAX:11039]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Togaviridae; Alphavirus
RefSeq	NC_003908 Western equine encephalomyelitis virus, complete genome.
DISEASE	H01534 Western equine encephalitis
Evidence	Literature
Reference	PMID: 16462
Authors	Hayes CG, Wallis RC
Title	Ecology of Western equine encephalomyelitis in the eastern United States.
Journal	Adv Virus Res. 1977;21:37-83.
DBLINKS	KEGG BRITE: NC_003908 KEGG GENOME: T40053 ICTV: 202205112 ViralZone: genus, family