Rodentia

Rodentia

Scientific Name	Rodentia [TAX:9989]
Lineage	cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Glires

Known viruses (12)

Scientific Name	Bouboui virus [TAX:64295]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Orthoflavivirus; Orthoflavivirus boubouiense
RefSeq	NC_033693 Bouboui virus strain DAK AR B490 polyprotein gene, complete cds.
Evidence	Literature
Reference	PMID: 19741066
Authors	Grard G, Moureau G, Charrel RN, Holmes EC, Gould EA, de Lamballerie X
Title	Genomics and evolution of Aedes-borne flaviviruses.
Journal	J Gen Virol. 2010 Jan;91(Pt 1):87-94.
DBLINKS	KEGG BRITE: NC_033693 ViralZone: family, genus

Scientific Name	cardiovirus E1 [TAX:2870386]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Caphthovirinae; Cardiovirus; Cardiovirus E
RefSeq	NC_076099 Cardiovirus E1 isolate RtMrut-PicoV/JL2014-1 polyprotein (QKK66_gp1) gene, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076099 ViralZone: family, genus

Scientific Name	cardiovirus F1 [TAX:2870373]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Caphthovirinae; Cardiovirus; Cardiovirus F
RefSeq	NC_075977 Cardiovirus F1 isolate RtMruf-PicoV/JL2014-1 polyprotein (QKJ43_gp1) gene, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_075977 ViralZone: family, genus

Scientific Name	Chenuda virus [TAX:40065]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Sedoreoviridae; Orbivirus
RefSeq	NC_027534 Chenuda virus isolate EGY1954/01 segment 1 RNA-dependent RNA polymerase (VP1) gene, complete cds. NC_027535 Chenuda virus isolate EGY1954/01 segment 2 inner core protein (VP2) gene, complete cds. NC_027536 Chenuda virus isolate EGY1954/01 segment 3 capping enzyme (VP3) gene, complete cds. NC_027537 Chenuda virus isolate EGY1954/01 segment 4 outer capsid protein (VP4) gene, complete cds. NC_027538 Chenuda virus isolate EGY1954/01 segment 5 tubule protein (NS1) gene, complete cds. NC_027548 Chenuda virus isolate EGY1954/01 segment 6 outer capsid protein 2 (VP5) gene, complete cds. NC_027549 Chenuda virus isolate EGY1954/01 segment 7 viral inclusion body protein (NS2) gene, complete cds. NC_027550 Chenuda virus isolate EGY1954/01 segment 8 major core protein (VP7) gene, complete cds. NC_027551 Chenuda virus isolate EGY1954/01 segment 9 helicase (VP6) and NS4 protein (NS4) genes, complete cds. NC_027552 Chenuda virus isolate EGY1954/01 segment 10 NS3 protein (NS3) and NS3a protein (NS3a) genes, complete cds.
Evidence	Literature
Reference	PMID: 25928203
Authors	Belaganahalli MN, Maan S, Maan NS, Brownlie J, Tesh R, Attoui H, Mertens PP
Title	Genetic characterization of the tick-borne orbiviruses.
Journal	Viruses. 2015 Apr 28;7(5):2185-209.
DBLINKS	KEGG BRITE: NC_027534 NC_027535 NC_027536 NC_027537 NC_027538 NC_027548 NC_027549 NC_027550 NC_027551 NC_027552 ICTV: 202204881 ViralZone: family, genus

Scientific Name	Eyach virus [TAX:62352]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Spinareoviridae; Coltivirus; Eyach coltivirus
RefSeq	NC_003696 Eyach virus segment 1, complete genome. NC_003697 Eyach virus segment 2, complete genome. NC_003698 Eyach virus segment 3, complete genome. NC_003699 Eyach virus segment 4, complete genome. NC_003700 Eyach virus segment 5, complete genome. NC_003701 Eyach virus segment 6, complete genome. NC_003702 Eyach virus segment 7, complete genome. NC_003703 Eyach virus segment 8, complete genome. NC_003704 Eyach virus segment 9, complete genome. NC_003705 Eyach virus segment 10, complete genome. NC_003706 Eyach virus segment 11, complete genome. NC_003707 Eyach virus segment 12, complete genome.
Evidence	Literature
Reference	PMID: 22526290
Authors	Hubálek Z, Rudolf I
Title	Tick-borne viruses in Europe.
Journal	Parasitol Res. 2012 Jul;111(1):9-36.
DBLINKS	KEGG BRITE: NC_003696 NC_003697 NC_003698 NC_003699 NC_003700 NC_003701 NC_003702 NC_003703 NC_003704 NC_003705 NC_003706 NC_003707 ViralZone: family, genus

Scientific Name	Icoaraci virus [TAX:426790]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Phenuiviridae; Phlebovirus; Phlebovirus icoaraciense
RefSeq	NC_055420 Icoaraci virus isolate BeAn24262 segment L, complete sequence. NC_055421 Icoaraci virus isolate BeAn24262 segment M, complete sequence. NC_055422 Icoaraci virus isolate BeAn24262 segment S, complete sequence.
Evidence	RefSeq
Evidence	Literature
Reference	PMID: 31802735
Authors	Hughes HR, Russell BJ, Lambert AJ
Title	Genetic Characterization of Frijoles and Chilibre Species Complex Viruses (Genus <i>Phlebovirus</i>; Family <i>Phenuiviridae</i>) and Three Unclassified New World Phleboviruses.
Journal	Am J Trop Med Hyg. 2020 Feb;102(2):359-365.
DBLINKS	KEGG BRITE: NC_055420 NC_055421 NC_055422 ViralZone: family, genus

Scientific Name	LuIII virus [TAX:35339]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Protoparvovirus; Protoparvovirus rodent1
GenBank	M81888 Parvovirus LuII DNA sequence.
Evidence	UniProt
DBLINKS	ViralZone: family, genus

Scientific Name	Lyssavirus mokola [TAX:12538]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Lyssavirus
RefSeq	NC_006429 Mokola virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_006429 ICTV: 202201732 ViralZone: family, genus

Scientific Name	Picornavirales sp. [TAX:1955153]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; unclassified Picornavirales
RefSeq	NC_075974 Picornavirales sp. isolate RtRn-PicoV/YN2014 polyprotein (QKJ40_gp1) gene, complete cds. NC_075975 Picornavirales sp. isolate RtCb-PicoV/HeB2014 polyprotein (QKJ41_gp1) gene, complete cds. NC_075978 Picornavirales sp. isolate RtNn-PicoV/HuB2015-1 polyprotein (QKJ44_gp1) gene, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_075974 NC_075975 NC_075978

Scientific Name	Picornaviridae sp. rodent/Ee/PicoV/NX2015 [TAX:1917412]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Ensavirinae; Enterovirus; Enterovirus K
RefSeq	NC_038989 Picornaviridae sp. rodent/Ee/PicoV/NX2015 polyprotein gene, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_038989 ViralZone: family, genus

Scientific Name	Potiskum virus [TAX:64314]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Orthoflavivirus; Orthoflavivirus saboyaense; Saboya virus
RefSeq	NC_029054 Potiskum virus strain IBAN 10069 polyprotein gene, complete cds.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_029054 ViralZone: family, genus

Scientific Name	rohelivirus A1 [TAX:2847266]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Heptrevirinae; Rohelivirus; Rohelivirus A
RefSeq	NC_075995 Picornaviridae sp. rodent/Ds/PicoV/IM2014 polyprotein (QKJ61_gp1) gene, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_075995 ViralZone: family