KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: bmu00010 bmu01200 bmu01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: bmu00010 bmu01200 bmu01230 bmu01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: bmu00010 bmu00020 bmu01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: bmu00010 bmu00020 bmu00620 bmu00785 bmu01200 bmu01210 bmu01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: bmu00020 bmu01200 bmu01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: bmu00020 bmu01200 bmu01210 bmu01230 bmu01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: bmu00020 bmu01200 bmu01210 bmu01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: bmu00030 bmu01200 bmu01100 bmu01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: bmu00030 bmu01200 bmu01100 bmu01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: bmu00030 bmu01200 bmu01230 bmu01100 bmu01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: bmu00030 bmu00230 bmu01200 bmu01230 bmu01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: bmu00030 bmu01200 bmu01100 bmu01120]
Other carbohydrate metabolism
M00014 Glucuronate pathway (uronate pathway) [PATH: bmu00040 bmu01100]
M00631 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH: bmu00040 bmu00030 bmu01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH: bmu00052 bmu01100]
M00552 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH: bmu00052 bmu01100]
M00129 Ascorbate biosynthesis, animals, glucose-1P => ascorbate [PATH: bmu00040 bmu00053 bmu01240 bmu01100]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH: bmu00500 bmu01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH: bmu00500 bmu01100]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH: bmu00520 bmu01250 bmu01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH: bmu00520 bmu00052 bmu01250 bmu01100]
M00892 UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH: bmu00520 bmu01250 bmu01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH: bmu00520 bmu01250 bmu01100]
M00012 Glyoxylate cycle [PATH: bmu00630 bmu01200 bmu01100 bmu01110]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH: bmu00280 bmu00630 bmu00640 bmu01200 bmu01100]
M00130 Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4 [PATH: bmu00562 bmu01100]
M00131 Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol [PATH: bmu00562 bmu01100]
M00132 Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH: bmu00562 bmu01100]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
M00101 Cholesterol biosynthesis, FPP => cholesterol [PATH: bmu00100 bmu01100]
M00103 Cholecalciferol biosynthesis [PATH: bmu00100 bmu01100]
M00106 Conjugated bile acid biosynthesis, cholate => taurocholate/glycocholate [PATH: bmu01100]
M00862 beta-Oxidation, peroxisome, tri/dihydroxycholestanoyl-CoA => choloyl/chenodeoxycholoyl-CoA [PATH: bmu01100]
M00107 Steroid hormone biosynthesis, cholesterol => pregnenolone => progesterone [PATH: bmu01100]
M00109 C21-Steroid hormone biosynthesis, progesterone => cortisol/cortisone [PATH: bmu01100]
M00110 C19/C18-Steroid hormone biosynthesis, pregnenolone => androstenedione => estrone [PATH: bmu01100]
M00976 C19-Steroid hormone biosynthesis, pregnenolone => testosterone => dihydrotestosterone [PATH: bmu01100]
M00977 C19-Steroid hormone biosynthesis (androgen backdoor pathway), pregnenolone => androsterone => dihydrotestosterone [PATH: bmu01100]
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: bmu00400 bmu01230 bmu01100 bmu01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: bmu00400 bmu01230 bmu01100 bmu01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH: bmu00400 bmu01230 bmu01100 bmu01110]
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH: bmu00400 bmu01230 bmu01100]
M00042 Catecholamine biosynthesis, tyrosine => dopamine => noradrenaline => adrenaline [PATH: bmu00350 bmu01100]
M00043 Thyroid hormone biosynthesis, tyrosine => triiodothyronine/thyroxine [PATH: bmu00350 bmu01100]
M00044 Tyrosine degradation, tyrosine => homogentisate [PATH: bmu00350 bmu01100]
M00533 Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH: bmu00350 bmu01220 bmu01100 bmu01120]
M00037 Melatonin biosynthesis, animals, tryptophan => serotonin => melatonin [PATH: bmu00380 bmu01100]
M00038 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate [PATH: bmu00380 bmu01100]
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
M00055 N-glycan precursor biosynthesis [PATH: bmu01100]
M00073 N-glycan precursor trimming [PATH: bmu01100]
M00075 N-glycan biosynthesis, complex type [PATH: bmu01100]
M00056 O-glycan biosynthesis, mucin type core [PATH: bmu01100]
M00872 O-glycan biosynthesis, mannose type (core M3) [PATH: bmu01100]
M00070 Glycosphingolipid biosynthesis, lacto-series, LacCer => Lc4Cer [PATH: bmu01100]
M00071 Glycosphingolipid biosynthesis, neolacto-series, LacCer => nLc4Cer [PATH: bmu01100]
M00068 Glycosphingolipid biosynthesis, globo-series, LacCer => Gb4Cer [PATH: bmu01100]
M00069 Glycosphingolipid biosynthesis, ganglio series, LacCer => GT3 [PATH: bmu01100]
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:bmu00730 bmu01100]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:bmu00750 bmu01240 bmu01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:bmu00760 bmu01240 bmu01100]
M00912 NAD biosynthesis, tryptophan => quinolinate => NAD [PATH:bmu00380 bmu00760 bmu01240 bmu01100]
M00622 Nicotinate degradation, nicotinate => fumarate [PATH:bmu00760 bmu01100 bmu01120]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:bmu00770 bmu01240 bmu01100 bmu01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:bmu00770 bmu01240 bmu01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:bmu00780 bmu01240 bmu01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:bmu00785 bmu01240 bmu01100]
M00882 Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:bmu00785 bmu01240 bmu01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:bmu00785 bmu01240 bmu01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:bmu00790 bmu00670 bmu01240 bmu01100]
M00842 Tetrahydrobiopterin biosynthesis, GTP => BH4 [PATH:bmu00790 bmu01240 bmu01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:bmu00790 bmu01240 bmu01100]
M00141 C1-unit interconversion, eukaryotes [PATH:bmu00670 bmu01240 bmu01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:bmu00860 bmu01240 bmu01100 bmu01110]
M00868 Heme biosynthesis, animals and fungi, glycine => heme [PATH:bmu00860 bmu01240 bmu01100 bmu01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:bmu00860 bmu01240 bmu01100 bmu01110]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:bmu00860 bmu01240 bmu01100]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:bmu00860 bmu01240 bmu01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:bmu00130 bmu01240 bmu01100 bmu01110]
M00128 Ubiquinone biosynthesis, eukaryotes, 4-hydroxybenzoate + polyprenyl-PP => ubiquinol [PATH:bmu00130 bmu01240 bmu01100]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:bmu00130 bmu01240 bmu01100 bmu01110]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
Drug resistance
M00627 beta-Lactam resistance, Bla system [PATH:bmu01501]
M00643 Multidrug resistance, efflux pump MexXY-OprM
M00649 Multidrug resistance, efflux pump AdeABC [PATH:bmu01501]
M00698 Multidrug resistance, efflux pump BpeEF-OprC
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00616 Sulfate-sulfur assimilation
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