KEGG Modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00002 Glycolysis, core module involving three-carbon compounds [PATH:bper00010 bper01200 bper01230 bper01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bper00010 bper00020 bper00620 bper00785 bper01200 bper01210 bper01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:bper00020 bper01200 bper01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bper00020 bper01200 bper01210 bper01230 bper01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bper00020 bper01200 bper01210 bper01100]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:bper00030 bper01200 bper01230 bper01100 bper01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH:bper00030 bper00230 bper01200 bper01230 bper01100]

Other carbohydrate metabolism
M00012 Glyoxylate cycle [PATH:bper00630 bper01200 bper01100 bper01110]

Energy metabolism
Carbon fixation
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:bper00430 bper00620 bper01200 bper01100 bper01120]

Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes [PATH:bper00190 bper01100]
M00149 Succinate dehydrogenase, prokaryotes [PATH:bper00190 bper01100]
M00151 Cytochrome bc1 complex respiratory unit [PATH:bper00190 bper01100]
M00155 Cytochrome c oxidase, prokaryotes [PATH:bper00190 bper01100]
M00153 Cytochrome bd ubiquinol oxidase [PATH:bper00190]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:bper00190 bper01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:bper00061 bper01212 bper01100]
M00083 Fatty acid biosynthesis, elongation [PATH:bper00061 bper01212 bper01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:bper00061 bper00071 bper01212 bper01100]
M00087 beta-Oxidation [PATH:bper00071 bper01212 bper01100]

Sterol biosynthesis
Lipid metabolism
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:bper00564 bper01100]

Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:bper00230 bper01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:bper00230 bper01232 bper01240 bper01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:bper00230 bper01232 bper01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:bper00230 bper00240 bper01232 bper01100]

Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:bper00240 bper01232 bper01240 bper01100]
M00938 Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:bper00240 bper01232 bper01100]

Amino acid metabolism
Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH:bper00260 bper00680 bper01200 bper01230 bper01100]
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:bper00260 bper01230 bper01100 bper01110]
M00621 Glycine cleavage system [PATH:bper00260 bper00630 bper00785 bper01200 bper01100]

Cysteine and methionine metabolism
Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:bper00290 bper00770 bper01210 bper01230 bper01100 bper01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:bper00290 bper01230 bper01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:bper00290 bper01210 bper01230 bper01100 bper01110]

Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:bper00300 bper01230 bper01100]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:bper00220 bper01210 bper01230 bper01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:bper00220 bper01230 bper01100]
M00015 Proline biosynthesis, glutamate => proline [PATH:bper00330 bper01230 bper01100]
M00970 Proline degradation, proline => glutamate [PATH:bper00330 bper01100]

Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:bper00400 bper01230 bper01100 bper01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:bper00400 bper01230 bper01100 bper01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:bper00400 bper01230 bper01100 bper01110]
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:bper00400 bper01230 bper01100]
M00044 Tyrosine degradation, tyrosine => homogentisate [PATH:bper00350 bper01100]

Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
M00063 CMP-KDO biosynthesis [PATH:bper00540 bper01250 bper01100]
M00064 ADP-L-glycero-D-manno-heptose biosynthesis [PATH:bper00540 bper01250 bper01100]

Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:bper00770 bper01240 bper01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:bper00780 bper01240 bper01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:bper00780 bper01240 bper01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:bper00785 bper01240 bper01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:bper00790 bper01240 bper01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:bper00860 bper01240 bper01100 bper01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:bper00860 bper01240 bper01100 bper01110]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:bper00130 bper01240 bper01100 bper01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
M00574 Pertussis pathogenicity signature, pertussis toxin [PATH:bper05133]

Drug resistance
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity