KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: cma00010 cma01200 cma01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: cma00010 cma01200 cma01230 cma01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: cma00010 cma00020 cma01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: cma00010 cma00020 cma00620 cma00785 cma01200 cma01210 cma01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: cma00020 cma01200 cma01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: cma00020 cma01200 cma01210 cma01230 cma01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: cma00020 cma01200 cma01210 cma01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: cma00030 cma01200 cma01100 cma01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: cma00030 cma01200 cma01100 cma01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: cma00030 cma01200 cma01230 cma01100 cma01120]
M00580 Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH: cma00030 cma01200 cma01230 cma01100 cma01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: cma00030 cma00230 cma01200 cma01230 cma01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: cma00030 cma01200 cma01100 cma01120]
Other carbohydrate metabolism
M00014 Glucuronate pathway (uronate pathway) [PATH: cma00040 cma01100]
M00631 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH: cma00040 cma00030 cma01100]
M00061 D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH: cma00040 cma00030 cma01100]
M00081 Pectin degradation [PATH: cma00040 cma01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH: cma00052 cma01100]
M00552 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH: cma00052 cma01100]
M00114 Ascorbate biosynthesis, plants, fructose-6P => ascorbate [PATH: cma00051 cma00053 cma01240 cma01100 cma01110]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH: cma00500 cma01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH: cma00500 cma01100]
M00565 Trehalose biosynthesis, D-glucose 1P => trehalose [PATH: cma00500 cma01100 cma01110]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH: cma00520 cma01250 cma01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH: cma00520 cma00052 cma01250 cma01100]
M00892 UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH: cma00520 cma01250 cma01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH: cma00520 cma01250 cma01100]
M00012 Glyoxylate cycle [PATH: cma00630 cma01200 cma01100 cma01110]
M00373 Ethylmalonyl pathway [PATH: cma00630 cma01200 cma01100 cma01120]
M00532 Photorespiration [PATH: cma00630 cma01200 cma01100 cma01110]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH: cma00280 cma00630 cma00640 cma01200 cma01100]
M00130 Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4 [PATH: cma00562 cma01100]
M00131 Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol [PATH: cma00562 cma01100]
M00132 Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH: cma00562 cma01100]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
M00101 Cholesterol biosynthesis, FPP => cholesterol [PATH: cma01100]
M00917 Phytosterol biosynthesis, squalene 2,3-epoxide => campesterol/sitosterol [PATH: cma01100 cma01110]
M00103 Cholecalciferol biosynthesis [PATH: cma01100]
M00862 beta-Oxidation, peroxisome, tri/dihydroxycholestanoyl-CoA => choloyl/chenodeoxycholoyl-CoA [PATH: cma01100]
M00107 Steroid hormone biosynthesis, cholesterol => pregnenolone => progesterone [PATH: cma01100]
M00109 C21-Steroid hormone biosynthesis, progesterone => cortisol/cortisone [PATH: cma01100]
M00110 C19/C18-Steroid hormone biosynthesis, pregnenolone => androstenedione => estrone [PATH: cma01100]
M00976 C19-Steroid hormone biosynthesis, pregnenolone => testosterone => dihydrotestosterone [PATH: cma01100]
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: cma00400 cma01230 cma01100 cma01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: cma00400 cma01230 cma01100 cma01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH: cma00400 cma01230 cma01100 cma01110]
M00910 Phenylalanine biosynthesis, chorismate => arogenate => phenylalanine [PATH: cma00400 cma01230 cma01100 cma01110]
M00040 Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH: cma00400 cma01230 cma01100 cma01110]
M00042 Catecholamine biosynthesis, tyrosine => dopamine => noradrenaline => adrenaline [PATH: cma00350 cma01100]
M00043 Thyroid hormone biosynthesis, tyrosine => triiodothyronine/thyroxine [PATH: cma00350 cma01100]
M00044 Tyrosine degradation, tyrosine => homogentisate [PATH: cma00350 cma01100]
M00037 Melatonin biosynthesis, animals, tryptophan => serotonin => melatonin [PATH: cma00380 cma01100]
M00038 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate [PATH: cma00380 cma01100]
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
M00055 N-glycan precursor biosynthesis [PATH: cma01100]
M00073 N-glycan precursor trimming [PATH: cma01100]
M00075 N-glycan biosynthesis, complex type [PATH: cma01100]
M00872 O-glycan biosynthesis, mannose type (core M3) [PATH: cma01100]
M00070 Glycosphingolipid biosynthesis, lacto-series, LacCer => Lc4Cer [PATH: cma01100]
M00071 Glycosphingolipid biosynthesis, neolacto-series, LacCer => nLc4Cer [PATH: cma01100]
M00068 Glycosphingolipid biosynthesis, globo-series, LacCer => Gb4Cer [PATH: cma01100]
M00069 Glycosphingolipid biosynthesis, ganglio series, LacCer => GT3 [PATH: cma01100]
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00897 Thiamine biosynthesis, plants, AIR (+ NAD+) => TMP/thiamine/TPP [PATH:cma00730 cma01240 cma01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:cma00730 cma01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:cma00740 cma01240 cma01100 cma01110]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:cma00750 cma01240 cma01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:cma00760 cma01240 cma01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:cma00770 cma01240 cma01100 cma01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:cma00770 cma01240 cma01100]
M00914 Coenzyme A biosynthesis, archaea, 2-oxoisovalerate => 4-phosphopantoate => CoA [PATH:cma00770 cma01240 cma01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:cma00780 cma01240 cma01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:cma00780 cma01240 cma01100]
M00577 Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin [PATH:cma00780 cma01240 cma01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:cma00785 cma01240 cma01100]
M00882 Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:cma00785 cma01240 cma01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:cma00785 cma01240 cma01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:cma00790 cma00670 cma01240 cma01100]
M00842 Tetrahydrobiopterin biosynthesis, GTP => BH4 [PATH:cma00790 cma01240 cma01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:cma00790 cma01240 cma01100]
M00140 C1-unit interconversion, prokaryotes [PATH:cma00670 cma01240 cma01100]
M00141 C1-unit interconversion, eukaryotes [PATH:cma00670 cma01240 cma01100]
M00868 Heme biosynthesis, animals and fungi, glycine => heme [PATH:cma00860 cma01240 cma01100 cma01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:cma00860 cma01240 cma01100 cma01110]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:cma00860 cma01240 cma01100]
M00924 Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:cma00860 cma01240 cma01100]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:cma00860 cma01240 cma01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:cma00130 cma01240 cma01100 cma01110]
M00128 Ubiquinone biosynthesis, eukaryotes, 4-hydroxybenzoate + polyprenyl-PP => ubiquinol [PATH:cma00130 cma01240 cma01100]
M00932 Phylloquinone biosynthesis, chorismate (+ phytyl-PP) => phylloquinol [PATH:cma00130 cma01240 cma01100 cma01110]
M00112 Tocopherol/tocotorienol biosynthesis, homogentisate + phytyl/geranylgeranyl-PP => tocopherol/tocotorienol [PATH:cma00130 cma01240 cma01100 cma01110]
M00933 Plastoquinone biosynthesis, homogentisate + solanesyl-PP => plastoquinol [PATH:cma00130 cma01240 cma01100 cma01110]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
Drug resistance
M00705 Multidrug resistance, efflux pump MepA
Plant pathogenicity
Symbiosis
Module set
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