KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: ema00010 ema01200 ema01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: ema00010 ema01200 ema01230 ema01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: ema00010 ema00020 ema01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: ema00010 ema00020 ema00620 ema00785 ema01200 ema01210 ema01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: ema00020 ema01200 ema01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: ema00020 ema01200 ema01210 ema01230 ema01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: ema00020 ema01200 ema01210 ema01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: ema00030 ema01200 ema01100 ema01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: ema00030 ema01200 ema01100 ema01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: ema00030 ema01200 ema01230 ema01100 ema01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: ema00030 ema00230 ema01200 ema01230 ema01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: ema00030 ema01200 ema01100 ema01120]
Other carbohydrate metabolism
M00014 Glucuronate pathway (uronate pathway) [PATH: ema00040 ema01100]
M00631 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH: ema00040 ema00030 ema01100]
M00061 D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH: ema00040 ema00030 ema01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH: ema00052 ema01100]
M00552 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH: ema00052 ema01100]
M00550 Ascorbate degradation, ascorbate => D-xylulose-5P [PATH: ema00053 ema01100 ema01120]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH: ema00500 ema01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH: ema00500 ema01100]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH: ema00520 ema01250 ema01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH: ema00520 ema00052 ema01250 ema01100]
M00892 UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH: ema00520 ema01250 ema01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH: ema00520 ema01250 ema01100]
M00761 Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH: ema00520 ema01100]
M00012 Glyoxylate cycle [PATH: ema00630 ema01200 ema01100 ema01110]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH: ema00280 ema00630 ema00640 ema01200 ema01100]
M00130 Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4 [PATH: ema00562 ema01100]
M00131 Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol [PATH: ema00562 ema01100]
M00132 Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH: ema00562 ema01100]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
M00101 Cholesterol biosynthesis, FPP => cholesterol [PATH: ema01100]
M00103 Cholecalciferol biosynthesis [PATH: ema01100]
M00107 Steroid hormone biosynthesis, cholesterol => pregnenolone => progesterone [PATH: ema01100]
M00109 C21-Steroid hormone biosynthesis, progesterone => cortisol/cortisone [PATH: ema01100]
M00110 C19/C18-Steroid hormone biosynthesis, pregnenolone => androstenedione => estrone [PATH: ema01100]
M00976 C19-Steroid hormone biosynthesis, pregnenolone => testosterone => dihydrotestosterone [PATH: ema01100]
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: ema00400 ema01230 ema01100 ema01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: ema00400 ema01230 ema01100 ema01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH: ema00400 ema01230 ema01100 ema01110]
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH: ema00400 ema01230 ema01100]
M00042 Catecholamine biosynthesis, tyrosine => dopamine => noradrenaline => adrenaline [PATH: ema00350 ema01100]
M00043 Thyroid hormone biosynthesis, tyrosine => triiodothyronine/thyroxine [PATH: ema00350 ema01100]
M00044 Tyrosine degradation, tyrosine => homogentisate [PATH: ema00350 ema01100]
M00037 Melatonin biosynthesis, animals, tryptophan => serotonin => melatonin [PATH: ema00380 ema01100]
M00038 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate [PATH: ema00380 ema01100]
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
M00055 N-glycan precursor biosynthesis [PATH: ema01100]
M00073 N-glycan precursor trimming [PATH: ema01100]
M00075 N-glycan biosynthesis, complex type [PATH: ema01100]
M00872 O-glycan biosynthesis, mannose type (core M3) [PATH: ema01100]
M00070 Glycosphingolipid biosynthesis, lacto-series, LacCer => Lc4Cer [PATH: ema01100]
M00071 Glycosphingolipid biosynthesis, neolacto-series, LacCer => nLc4Cer [PATH: ema01100]
M00069 Glycosphingolipid biosynthesis, ganglio series, LacCer => GT3 [PATH: ema01100]
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00127 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH: ema00730 ema01240 ema01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH: ema00730 ema01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH: ema00740 ema01240 ema01100 ema01110]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH: ema00750 ema01240 ema01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH: ema00760 ema01240 ema01100]
M00912 NAD biosynthesis, tryptophan => quinolinate => NAD [PATH: ema00380 ema00760 ema01240 ema01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH: ema00770 ema01240 ema01100 ema01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH: ema00770 ema01240 ema01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH: ema00780 ema01240 ema01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH: ema00780 ema01240 ema01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH: ema00785 ema01240 ema01100]
M00882 Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH: ema00785 ema01240 ema01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH: ema00785 ema01240 ema01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH: ema00790 ema00670 ema01240 ema01100]
M00842 Tetrahydrobiopterin biosynthesis, GTP => BH4 [PATH: ema00790 ema01240 ema01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH: ema00790 ema01240 ema01100]
M00141 C1-unit interconversion, eukaryotes [PATH: ema00670 ema01240 ema01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH: ema00860 ema01240 ema01100 ema01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH: ema00860 ema01240 ema01100 ema01110]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH: ema00130 ema01240 ema01100 ema01110]
M00128 Ubiquinone biosynthesis, eukaryotes, 4-hydroxybenzoate + polyprenyl-PP => ubiquinol [PATH: ema00130 ema01240 ema01100]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH: ema00130 ema01240 ema01100 ema01110]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
Drug resistance
M00696 Multidrug resistance, efflux pump AcrEF-TolC
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00616 Sulfate-sulfur assimilation
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