KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: klm00010 klm01200 klm01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: klm00010 klm01200 klm01230 klm01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: klm00010 klm00020 klm01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: klm00010 klm00020 klm00620 klm00785 klm01200 klm01210 klm01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: klm00020 klm01200 klm01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: klm00020 klm01200 klm01210 klm01230 klm01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: klm00020 klm01200 klm01210 klm01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: klm00030 klm01200 klm01100 klm01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: klm00030 klm01200 klm01100 klm01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: klm00030 klm01200 klm01230 klm01100 klm01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: klm00030 klm00230 klm01200 klm01230 klm01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: klm00030 klm01200 klm01100 klm01120]
Other carbohydrate metabolism
M00631 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:klm00040 klm00030 klm01100]
M00061 D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:klm00040 klm00030 klm01100]
M00552 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:klm00052 klm01100]
M00550 Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:klm00053 klm01100 klm01120]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:klm00500 klm01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH:klm00500 klm01100]
M00565 Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:klm00500 klm01100 klm01110]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:klm00520 klm01250 klm01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:klm00520 klm00052 klm01250 klm01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:klm00520 klm01250 klm01100]
M00761 Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:klm00520 klm01100]
M00012 Glyoxylate cycle [PATH:klm00630 klm01200 klm01100 klm01110]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00127 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH: klm00730 klm01240 klm01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH: klm00730 klm01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH: klm00740 klm01240 klm01100 klm01110]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH: klm00750 klm01240 klm01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH: klm00760 klm01240 klm01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH: klm00770 klm01240 klm01100 klm01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH: klm00770 klm01240 klm01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH: klm00780 klm01240 klm01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH: klm00780 klm01240 klm01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH: klm00785 klm01240 klm01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH: klm00790 klm00670 klm01240 klm01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH: klm00860 klm01240 klm01100 klm01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH: klm00860 klm01240 klm01100 klm01110]
M00924 Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH: klm00860 klm01240 klm01100]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH: klm00860 klm01240 klm01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH: klm00130 klm01240 klm01100 klm01110]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH: klm00130 klm01240 klm01100 klm01110]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
Drug resistance
M00696 Multidrug resistance, efflux pump AcrEF-TolC
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00615 Nitrate assimilation
M00616 Sulfate-sulfur assimilation
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