KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00002 Glycolysis, core module involving three-carbon compounds [PATH:paf00010 paf01200 paf01230 paf01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:paf00010 paf00020 paf01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:paf00010 paf00020 paf00620 paf00785 paf01200 paf01210 paf01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:paf00020 paf01200 paf01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:paf00020 paf01200 paf01210 paf01230 paf01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:paf00020 paf01200 paf01210 paf01100]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:paf00030 paf01200 paf01230 paf01100 paf01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH:paf00030 paf00230 paf01200 paf01230 paf01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:paf00030 paf01200 paf01100 paf01120]
Other carbohydrate metabolism
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:paf00740 paf01240 paf01100 paf01110]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:paf00750 paf01240 paf01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:paf00760 paf01240 paf01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:paf00770 paf01240 paf01100 paf01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:paf00770 paf01240 paf01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:paf00780 paf01240 paf01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:paf00780 paf01240 paf01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:paf00785 paf01240 paf01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:paf00790 paf00670 paf01240 paf01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:paf00790 paf01240 paf01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:paf00860 paf01240 paf01100 paf01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:paf00860 paf01240 paf01100 paf01110]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:paf00860 paf01240 paf01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:paf00130 paf01240 paf01100 paf01110]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
Drug resistance
M00745 Imipenem resistance, repression of porin OprD
M00718 Multidrug resistance, efflux pump MexAB-OprM
M00639 Multidrug resistance, efflux pump MexCD-OprJ
M00641 Multidrug resistance, efflux pump MexEF-OprN
M00642 Multidrug resistance, efflux pump MexJK-OprM
M00643 Multidrug resistance, efflux pump MexXY-OprM
M00769 Multidrug resistance, efflux pump MexPQ-OpmE
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00615 Nitrate assimilation
M00616 Sulfate-sulfur assimilation
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