KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: pfi00010 pfi01200 pfi01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: pfi00010 pfi01200 pfi01230 pfi01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: pfi00010 pfi00020 pfi01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: pfi00010 pfi00020 pfi00620 pfi00785 pfi01200 pfi01210 pfi01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: pfi00020 pfi01200 pfi01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: pfi00020 pfi01200 pfi01210 pfi01230 pfi01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: pfi00020 pfi01200 pfi01210 pfi01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: pfi00030 pfi01200 pfi01100 pfi01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: pfi00030 pfi01200 pfi01100 pfi01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: pfi00030 pfi01200 pfi01230 pfi01100 pfi01120]
M00580 Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH: pfi00030 pfi01200 pfi01230 pfi01100 pfi01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: pfi00030 pfi00230 pfi01200 pfi01230 pfi01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: pfi00030 pfi01200 pfi01100 pfi01120]
Other carbohydrate metabolism
M00552 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:pfi00052 pfi01100]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:pfi00500 pfi01100]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:pfi00520 pfi01250 pfi01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:pfi00520 pfi00052 pfi01250 pfi01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:pfi00520 pfi01250 pfi01100]
M00761 Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:pfi00520 pfi01100]
M00012 Glyoxylate cycle [PATH:pfi00630 pfi01200 pfi01100 pfi01110]
M00373 Ethylmalonyl pathway [PATH:pfi00630 pfi01200 pfi01100 pfi01120]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:pfi00280 pfi00630 pfi00640 pfi01200 pfi01100]
M00968 Pentose bisphosphate pathway (nucleoside degradation), archaea, nucleoside/NMP => 3-PGA/glycerone phosphate [PATH:pfi00030 pfi00230 pfi00240 pfi00630 pfi01100]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00896 Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP [PATH:pfi00730 pfi01240 pfi01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:pfi00730 pfi01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:pfi00740 pfi01240 pfi01100 pfi01110]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:pfi00750 pfi01240 pfi01100]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:pfi00750 pfi01240 pfi01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:pfi00760 pfi01240 pfi01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:pfi00770 pfi01240 pfi01100 pfi01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:pfi00770 pfi01240 pfi01100]
M00914 Coenzyme A biosynthesis, archaea, 2-oxoisovalerate => 4-phosphopantoate => CoA [PATH:pfi00770 pfi01240 pfi01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:pfi00780 pfi01240 pfi01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pfi00780 pfi01240 pfi01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pfi00785 pfi01240 pfi01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:pfi00790 pfi00670 pfi01240 pfi01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pfi00790 pfi01240 pfi01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:pfi00860 pfi01240 pfi01100 pfi01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:pfi00860 pfi01240 pfi01100 pfi01110]
M00925 Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide [PATH:pfi00860 pfi01240 pfi01100]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:pfi00860 pfi01240 pfi01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:pfi01240 pfi01100 pfi01110]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
Drug resistance
M00745 Imipenem resistance, repression of porin OprD
M00641 Multidrug resistance, efflux pump MexEF-OprN
M00642 Multidrug resistance, efflux pump MexJK-OprM
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00615 Nitrate assimilation
M00616 Sulfate-sulfur assimilation
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