KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: phe00010 phe01200 phe01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: phe00010 phe01200 phe01230 phe01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: phe00010 phe00020 phe01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: phe00010 phe00020 phe00620 phe00785 phe01200 phe01210 phe01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: phe00020 phe01200 phe01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: phe00020 phe01200 phe01210 phe01230 phe01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: phe00020 phe01200 phe01210 phe01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: phe00030 phe01200 phe01100 phe01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: phe00030 phe01200 phe01100 phe01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: phe00030 phe01200 phe01230 phe01100 phe01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: phe00030 phe00230 phe01200 phe01230 phe01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: phe00030 phe01200 phe01100 phe01120]
Other carbohydrate metabolism
M00631 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:phe00040 phe00030 phe01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:phe00052 phe01100]
M00552 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:phe00052 phe01100]
M00550 Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:phe00053 phe01100 phe01120]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:phe00500 phe01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH:phe00500 phe01100]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:phe00520 phe01250 phe01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:phe00520 phe00052 phe01250 phe01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:phe00520 phe01250 phe01100]
M00761 Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:phe00520 phe01100]
M00012 Glyoxylate cycle [PATH:phe00630 phe01200 phe01100 phe01110]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00127 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH: phe00730 phe01240 phe01100]
M00896 Thiamine biosynthesis, archaea, AIR (+ NAD+) => TMP/TPP [PATH: phe00730 phe01240 phe01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH: phe00730 phe01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH: phe00740 phe01240 phe01100 phe01110]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH: phe00750 phe01240 phe01100]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH: phe00750 phe01240 phe01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH: phe00760 phe01240 phe01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH: phe00770 phe01240 phe01100 phe01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH: phe00770 phe01240 phe01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH: phe00780 phe01240 phe01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH: phe00780 phe01240 phe01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH: phe00785 phe01240 phe01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH: phe00790 phe00670 phe01240 phe01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH: phe00790 phe01240 phe01100]
M00140 C1-unit interconversion, prokaryotes [PATH: phe00670 phe01240 phe01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH: phe00860 phe01240 phe01100 phe01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH: phe00860 phe01240 phe01100 phe01110]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH: phe00860 phe01240 phe01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH: phe00130 phe01240 phe01100 phe01110]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH: phe00130 phe01240 phe01100 phe01110]
M00930 Menaquinone biosynthesis, futalosine pathway [PATH: phe00130 phe01240 phe01100]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
Drug resistance
M00627 beta-Lactam resistance, Bla system [PATH:phe01501]
M00745 Imipenem resistance, repression of porin OprD
M00641 Multidrug resistance, efflux pump MexEF-OprN
M00642 Multidrug resistance, efflux pump MexJK-OprM
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00615 Nitrate assimilation
M00616 Sulfate-sulfur assimilation
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