KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: pta00010 pta01200 pta01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: pta00010 pta01200 pta01230 pta01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: pta00010 pta00020 pta01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: pta00010 pta00020 pta00620 pta00785 pta01200 pta01210 pta01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: pta00020 pta01200 pta01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: pta00020 pta01200 pta01210 pta01230 pta01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: pta00020 pta01200 pta01210 pta01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: pta00030 pta01200 pta01100 pta01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: pta00030 pta01200 pta01100 pta01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: pta00030 pta01200 pta01230 pta01100 pta01120]
M00580 Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH: pta00030 pta01200 pta01230 pta01100 pta01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: pta00030 pta00230 pta01200 pta01230 pta01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: pta00030 pta01200 pta01100 pta01120]
Other carbohydrate metabolism
M00014 Glucuronate pathway (uronate pathway) [PATH: pta00040 pta01100]
M00631 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH: pta00040 pta00030 pta01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH: pta00052 pta01100]
M00552 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH: pta00052 pta01100]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH: pta00500 pta01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH: pta00500 pta01100]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH: pta00520 pta01250 pta01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH: pta00520 pta00052 pta01250 pta01100]
M00892 UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH: pta00520 pta01250 pta01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH: pta00520 pta01250 pta01100]
M00012 Glyoxylate cycle [PATH: pta00630 pta01200 pta01100 pta01110]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH: pta00280 pta00630 pta00640 pta01200 pta01100]
M00130 Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4 [PATH: pta00562 pta01100]
M00131 Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol [PATH: pta00562 pta01100]
M00132 Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH: pta00562 pta01100]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
M00101 Cholesterol biosynthesis, FPP => cholesterol [PATH: pta01100]
M00103 Cholecalciferol biosynthesis [PATH: pta01100]
M00107 Steroid hormone biosynthesis, cholesterol => pregnenolone => progesterone [PATH: pta01100]
M00109 C21-Steroid hormone biosynthesis, progesterone => cortisol/cortisone [PATH: pta01100]
M00110 C19/C18-Steroid hormone biosynthesis, pregnenolone => androstenedione => estrone [PATH: pta01100]
M00976 C19-Steroid hormone biosynthesis, pregnenolone => testosterone => dihydrotestosterone [PATH: pta01100]
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: pta00400 pta01230 pta01100 pta01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: pta00400 pta01230 pta01100 pta01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH: pta00400 pta01230 pta01100 pta01110]
M00040 Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH: pta00400 pta01230 pta01100 pta01110]
M00042 Catecholamine biosynthesis, tyrosine => dopamine => noradrenaline => adrenaline [PATH: pta00350 pta01100]
M00043 Thyroid hormone biosynthesis, tyrosine => triiodothyronine/thyroxine [PATH: pta00350 pta01100]
M00044 Tyrosine degradation, tyrosine => homogentisate [PATH: pta00350 pta01100]
M00037 Melatonin biosynthesis, animals, tryptophan => serotonin => melatonin [PATH: pta00380 pta01100]
M00038 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate [PATH: pta00380 pta01100]
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
M00055 N-glycan precursor biosynthesis [PATH: pta01100]
M00073 N-glycan precursor trimming [PATH: pta01100]
M00075 N-glycan biosynthesis, complex type [PATH: pta01100]
M00872 O-glycan biosynthesis, mannose type (core M3) [PATH: pta01100]
M00065 GPI-anchor biosynthesis, core oligosaccharide [PATH: pta01100]
M00070 Glycosphingolipid biosynthesis, lacto-series, LacCer => Lc4Cer [PATH: pta01100]
M00071 Glycosphingolipid biosynthesis, neolacto-series, LacCer => nLc4Cer [PATH: pta01100]
M00069 Glycosphingolipid biosynthesis, ganglio series, LacCer => GT3 [PATH: pta01100]
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:pta00730 pta01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:pta00740 pta01240 pta01100 pta01110]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:pta00750 pta01240 pta01100]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:pta00750 pta01240 pta01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:pta00760 pta01240 pta01100]
M00912 NAD biosynthesis, tryptophan => quinolinate => NAD [PATH:pta00380 pta00760 pta01240 pta01100]
M00622 Nicotinate degradation, nicotinate => fumarate [PATH:pta00760 pta01100 pta01120]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:pta00770 pta01240 pta01100 pta01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:pta00770 pta01240 pta01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:pta00780 pta01240 pta01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:pta00780 pta01240 pta01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:pta00785 pta01240 pta01100]
M00882 Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:pta00785 pta01240 pta01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:pta00785 pta01240 pta01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:pta00790 pta00670 pta01240 pta01100]
M00842 Tetrahydrobiopterin biosynthesis, GTP => BH4 [PATH:pta00790 pta01240 pta01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:pta00790 pta01240 pta01100]
M00140 C1-unit interconversion, prokaryotes [PATH:pta00670 pta01240 pta01100]
M00141 C1-unit interconversion, eukaryotes [PATH:pta00670 pta01240 pta01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:pta00860 pta01240 pta01100 pta01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:pta00860 pta01240 pta01100 pta01110]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:pta00860 pta01240 pta01100]
M00924 Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH:pta00860 pta01240 pta01100]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:pta00860 pta01240 pta01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:pta00130 pta01240 pta01100 pta01110]
M00128 Ubiquinone biosynthesis, eukaryotes, 4-hydroxybenzoate + polyprenyl-PP => ubiquinol [PATH:pta00130 pta01240 pta01100]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
Drug resistance
M00745 Imipenem resistance, repression of porin OprD
M00641 Multidrug resistance, efflux pump MexEF-OprN
M00642 Multidrug resistance, efflux pump MexJK-OprM
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00615 Nitrate assimilation
M00616 Sulfate-sulfur assimilation
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