KEGG Modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:saux00010 saux01200 saux01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:saux00010 saux01200 saux01230 saux01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:saux00010 saux00020 saux01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:saux00010 saux00020 saux00620 saux00785 saux01200 saux01210 saux01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:saux00020 saux01200 saux01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:saux00020 saux01200 saux01210 saux01230 saux01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:saux00020 saux01200 saux01210 saux01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:saux00030 saux01200 saux01100 saux01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:saux00030 saux01200 saux01100 saux01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:saux00030 saux01200 saux01230 saux01100 saux01120]
M00580 Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH:saux00030 saux01200 saux01230 saux01100 saux01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH:saux00030 saux00230 saux01200 saux01230 saux01100]

Other carbohydrate metabolism
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:saux00520 saux01250 saux01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:saux00520 saux01250 saux01100]

Energy metabolism
Carbon fixation
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:saux00430 saux00620 saux01200 saux01100 saux01120]

Methane metabolism
M00345 Formaldehyde assimilation, ribulose monophosphate pathway [PATH:saux00030 saux00680 saux01200 saux01230 saux01100 saux01120]

Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:saux00061 saux01212 saux01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:saux00061 saux00071 saux01212 saux01100]

Sterol biosynthesis
Lipid metabolism
Nucleotide metabolism
Purine metabolism
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:saux00230 saux01232 saux01240 saux01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:saux00230 saux01232 saux01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:saux00230 saux00240 saux01232 saux01100]

Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:saux00240 saux01232 saux01240 saux01100]

Amino acid metabolism
Serine and threonine metabolism
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:saux00260 saux01230 saux01100 saux01110]
M00621 Glycine cleavage system [PATH:saux00260 saux00630 saux00785 saux01200 saux01100]
M00555 Betaine biosynthesis, choline => betaine [PATH:saux00260 saux01100]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:saux00270 saux00920 saux01200 saux01230 saux01100 saux01110]
M00017 Methionine biosynthesis, aspartate => homoserine => methionine [PATH:saux00270 saux01230 saux01100]

Branched-chain amino acid metabolism
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:saux00290 saux01210 saux01230 saux01100 saux01110]

Lysine metabolism
Arginine and proline metabolism
M00844 Arginine biosynthesis, ornithine => arginine [PATH:saux00220 saux01230 saux01100]
M00970 Proline degradation, proline => glutamate [PATH:saux00330 saux01100]
M00972 Proline metabolism [PATH:saux00330 saux01100]

Polyamine biosynthesis
Histidine metabolism
M00045 Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:saux00340 saux01100]

Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:saux00400 saux01230 saux01100 saux01110]

Other amino acid metabolism
M00949 Staphylopine biosynthesis, L-histidine => staphylopine [PATH:saux00470 saux01100]

Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:saux00730 saux01100]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:saux00750 saux01240 saux01100]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:saux00770 saux01240 saux01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:saux00780 saux01240 saux01100]
M00577 Biotin biosynthesis, BioW pathway, pimelate => pimeloyl-CoA => biotin [PATH:saux00780 saux01240 saux01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:saux00785 saux01240 saux01100]
M00140 C1-unit interconversion, prokaryotes [PATH:saux00670 saux01240 saux01100]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:saux00860 saux01240 saux01100]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
M00364 C10-C20 isoprenoid biosynthesis, bacteria [PATH:saux00900 saux01100 saux01110]

Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
M00876 Staphyloferrin A biosynthesis, L-ornithine => staphyloferrin A [PATH:saux00997 saux01100 saux01110]
M00875 Staphyloferrin B biosynthesis, L-serine => staphyloferrin B [PATH:saux00997 saux01100 saux01110]

Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
Drug resistance
M00726 Cationic antimicrobial peptide (CAMP) resistance, lysyl-phosphatidylglycerol (L-PG) synthase MprF [PATH:saux01503]
M00730 Cationic antimicrobial peptide (CAMP) resistance, VraFG transporter [PATH:saux01503]
M00700 Multidrug resistance, efflux pump AbcA
M00702 Multidrug resistance, efflux pump NorB
M00714 Multidrug resistance, efflux pump QacA

Plant pathogenicity
Symbiosis
Module set
Metabolic capacity