KEGG Modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:scv00010 scv01200 scv01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:scv00010 scv01200 scv01230 scv01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:scv00010 scv00020 scv01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:scv00010 scv00020 scv00620 scv00785 scv01200 scv01210 scv01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:scv00020 scv01200 scv01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:scv00020 scv01200 scv01210 scv01230 scv01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:scv00020 scv01200 scv01210 scv01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:scv00030 scv01200 scv01100 scv01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:scv00030 scv01200 scv01100 scv01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:scv00030 scv01200 scv01230 scv01100 scv01120]
M00580 Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH:scv00030 scv01200 scv01230 scv01100 scv01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH:scv00030 scv00230 scv01200 scv01230 scv01100]

Other carbohydrate metabolism
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:scv00052 scv01100]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:scv00520 scv01250 scv01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:scv00520 scv00052 scv01250 scv01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:scv00520 scv01250 scv01100]

Energy metabolism
Carbon fixation
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:scv00430 scv00620 scv01200 scv01100 scv01120]

Methane metabolism
M00345 Formaldehyde assimilation, ribulose monophosphate pathway [PATH:scv00030 scv00680 scv01200 scv01230 scv01100 scv01120]

Nitrogen metabolism
Sulfur metabolism
M00176 Assimilatory sulfate reduction, sulfate => H2S [PATH:scv00920 scv01100 scv01120]

Photosynthesis
ATP synthesis
M00416 Cytochrome aa3-600 menaquinol oxidase [PATH:scv00190 scv01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:scv00190 scv01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:scv00061 scv01212 scv01100]
M00083 Fatty acid biosynthesis, elongation [PATH:scv00061 scv01212 scv01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:scv00061 scv00071 scv01212 scv01100]

Sterol biosynthesis
Lipid metabolism
Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:scv00230 scv01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:scv00230 scv01232 scv01240 scv01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:scv00230 scv01232 scv01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:scv00230 scv00240 scv01232 scv01100]

Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:scv00240 scv01232 scv01240 scv01100]

Amino acid metabolism
Serine and threonine metabolism
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:scv00260 scv01230 scv01100 scv01110]
M00621 Glycine cleavage system [PATH:scv00260 scv00630 scv00785 scv01200 scv01100]
M00555 Betaine biosynthesis, choline => betaine [PATH:scv00260 scv01100]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:scv00270 scv00920 scv01200 scv01230 scv01100 scv01110]
M00609 Cysteine biosynthesis, methionine => cysteine [PATH:scv00270 scv01230 scv01100]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:scv00290 scv00770 scv01210 scv01230 scv01100 scv01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:scv00290 scv01230 scv01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:scv00290 scv01210 scv01230 scv01100 scv01110]

Lysine metabolism
Arginine and proline metabolism
M00844 Arginine biosynthesis, ornithine => arginine [PATH:scv00220 scv01230 scv01100]
M00970 Proline degradation, proline => glutamate [PATH:scv00330 scv01100]
M00972 Proline metabolism [PATH:scv00330 scv01100]

Polyamine biosynthesis
Histidine metabolism
M00045 Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:scv00340 scv01100]

Aromatic amino acid metabolism
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:scv00400 scv01230 scv01100 scv01110]

Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:scv00730 scv01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:scv00740 scv01240 scv01100 scv01110]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:scv00750 scv01240 scv01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:scv00760 scv01240 scv01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:scv00770 scv01240 scv01100 scv01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:scv00770 scv01240 scv01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:scv00785 scv01240 scv01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:scv00790 scv01240 scv01100]
M00140 C1-unit interconversion, prokaryotes [PATH:scv00670 scv01240 scv01100]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:scv00860 scv01240 scv01100]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:scv00130 scv01240 scv01100 scv01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
M00364 C10-C20 isoprenoid biosynthesis, bacteria [PATH:scv00900 scv01100 scv01110]

Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
M00876 Staphyloferrin A biosynthesis, L-ornithine => staphyloferrin A [PATH:scv00997 scv01100 scv01110]

Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
Drug resistance
M00700 Multidrug resistance, efflux pump AbcA
M00702 Multidrug resistance, efflux pump NorB
M00705 Multidrug resistance, efflux pump MepA

Plant pathogenicity
Symbiosis
Module set
Metabolic capacity