KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: shb00010 shb01200 shb01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: shb00010 shb01200 shb01230 shb01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: shb00010 shb00020 shb01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: shb00010 shb00020 shb00620 shb00785 shb01200 shb01210 shb01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: shb00020 shb01200 shb01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: shb00020 shb01200 shb01210 shb01230 shb01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: shb00020 shb01200 shb01210 shb01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: shb00030 shb01200 shb01100 shb01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: shb00030 shb01200 shb01100 shb01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: shb00030 shb01200 shb01230 shb01100 shb01120]
M00580 Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH: shb00030 shb01200 shb01230 shb01100 shb01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: shb00030 shb00230 shb01200 shb01230 shb01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: shb00030 shb01200 shb01100 shb01120]
Other carbohydrate metabolism
M00061 D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:shb00040 shb00030 shb01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:shb00052 shb01100]
M00552 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:shb00052 shb01100]
M00550 Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:shb00053 shb01100 shb01120]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:shb00500 shb01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH:shb00500 shb01100]
M00565 Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:shb00500 shb01100 shb01110]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:shb00520 shb01250 shb01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:shb00520 shb00052 shb01250 shb01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:shb00520 shb01250 shb01100]
M00761 Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:shb00520 shb01100]
M00012 Glyoxylate cycle [PATH:shb00630 shb01200 shb01100 shb01110]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00127 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH: shb00730 shb01240 shb01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH: shb00730 shb01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH: shb00740 shb01240 shb01100 shb01110]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH: shb00750 shb01240 shb01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH: shb00770 shb01240 shb01100 shb01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH: shb00770 shb01240 shb01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH: shb00780 shb01240 shb01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH: shb00780 shb01240 shb01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH: shb00785 shb01240 shb01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH: shb00790 shb00670 shb01240 shb01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH: shb00790 shb01240 shb01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH: shb00860 shb01240 shb01100 shb01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH: shb00860 shb01240 shb01100 shb01110]
M00924 Cobalamin biosynthesis, anaerobic, uroporphyrinogen III => sirohydrochlorin => cobyrinate a,c-diamide [PATH: shb00860 shb01240 shb01100]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH: shb00860 shb01240 shb01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH: shb00130 shb01240 shb01100 shb01110]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH: shb00130 shb01240 shb01100 shb01110]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
Drug resistance
M00744 Cationic antimicrobial peptide (CAMP) resistance, protease PgtE
M00696 Multidrug resistance, efflux pump AcrEF-TolC
M00746 Multidrug resistance, repression of porin OmpF
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00616 Sulfate-sulfur assimilation
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