KEGG Modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:shh00010 shh01200 shh01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:shh00010 shh01200 shh01230 shh01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:shh00010 shh00020 shh01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:shh00010 shh00020 shh00620 shh00785 shh01200 shh01210 shh01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:shh00020 shh01200 shh01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:shh00020 shh01200 shh01210 shh01230 shh01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:shh00020 shh01200 shh01210 shh01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:shh00030 shh01200 shh01100 shh01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:shh00030 shh01200 shh01100 shh01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:shh00030 shh01200 shh01230 shh01100 shh01120]
M00580 Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH:shh00030 shh01200 shh01230 shh01100 shh01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH:shh00030 shh00230 shh01200 shh01230 shh01100]

Other carbohydrate metabolism
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:shh00520 shh01250 shh01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:shh00520 shh01250 shh01100]

Energy metabolism
Carbon fixation
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:shh00430 shh00620 shh01200 shh01100 shh01120]

Methane metabolism
M00345 Formaldehyde assimilation, ribulose monophosphate pathway [PATH:shh00030 shh00680 shh01200 shh01230 shh01100 shh01120]

Nitrogen metabolism
Sulfur metabolism
M00176 Assimilatory sulfate reduction, sulfate => H2S [PATH:shh00920 shh01100 shh01120]

Photosynthesis
ATP synthesis
M00416 Cytochrome aa3-600 menaquinol oxidase [PATH:shh00190 shh01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:shh00190 shh01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:shh00061 shh01212 shh01100]
M00083 Fatty acid biosynthesis, elongation [PATH:shh00061 shh01212 shh01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:shh00061 shh00071 shh01212 shh01100]

Sterol biosynthesis
Lipid metabolism
Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:shh00230 shh01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:shh00230 shh01232 shh01240 shh01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:shh00230 shh01232 shh01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:shh00230 shh00240 shh01232 shh01100]

Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:shh00240 shh01232 shh01240 shh01100]

Amino acid metabolism
Serine and threonine metabolism
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:shh00260 shh01230 shh01100 shh01110]
M00621 Glycine cleavage system [PATH:shh00260 shh00630 shh00785 shh01200 shh01100]
M00555 Betaine biosynthesis, choline => betaine [PATH:shh00260 shh01100]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:shh00270 shh00920 shh01200 shh01230 shh01100 shh01110]
M00017 Methionine biosynthesis, aspartate => homoserine => methionine [PATH:shh00270 shh01230 shh01100]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:shh00290 shh00770 shh01210 shh01230 shh01100 shh01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:shh00290 shh01230 shh01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:shh00290 shh01210 shh01230 shh01100 shh01110]

Lysine metabolism
Arginine and proline metabolism
M00844 Arginine biosynthesis, ornithine => arginine [PATH:shh00220 shh01230 shh01100]
M00970 Proline degradation, proline => glutamate [PATH:shh00330 shh01100]
M00972 Proline metabolism [PATH:shh00330 shh01100]

Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:shh00400 shh01230 shh01100 shh01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:shh00400 shh01230 shh01100 shh01110]

Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:shh00730 shh01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:shh00740 shh01240 shh01100 shh01110]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:shh00750 shh01240 shh01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:shh00770 shh01240 shh01100 shh01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:shh00770 shh01240 shh01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:shh00785 shh01240 shh01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:shh00790 shh00670 shh01240 shh01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:shh00790 shh01240 shh01100]
M00140 C1-unit interconversion, prokaryotes [PATH:shh00670 shh01240 shh01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:shh00860 shh01240 shh01100 shh01110]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:shh00860 shh01240 shh01100]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:shh00130 shh01240 shh01100 shh01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
M00364 C10-C20 isoprenoid biosynthesis, bacteria [PATH:shh00900 shh01100 shh01110]

Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
M00876 Staphyloferrin A biosynthesis, L-ornithine => staphyloferrin A [PATH:shh00997 shh01100 shh01110]

Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
Drug resistance
M00627 beta-Lactam resistance, Bla system [PATH:shh01501]
M00726 Cationic antimicrobial peptide (CAMP) resistance, lysyl-phosphatidylglycerol (L-PG) synthase MprF [PATH:shh01503]
M00730 Cationic antimicrobial peptide (CAMP) resistance, VraFG transporter [PATH:shh01503]
M00700 Multidrug resistance, efflux pump AbcA
M00702 Multidrug resistance, efflux pump NorB
M00714 Multidrug resistance, efflux pump QacA
M00705 Multidrug resistance, efflux pump MepA

Plant pathogenicity
Symbiosis
Module set
Metabolic capacity