KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: sho00010 sho01200 sho01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: sho00010 sho01200 sho01230 sho01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: sho00010 sho00020 sho01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: sho00010 sho00020 sho00620 sho00785 sho01200 sho01210 sho01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: sho00020 sho01200 sho01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: sho00020 sho01200 sho01210 sho01230 sho01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: sho00020 sho01200 sho01210 sho01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: sho00030 sho01200 sho01100 sho01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: sho00030 sho01200 sho01100 sho01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: sho00030 sho01200 sho01230 sho01100 sho01120]
M00580 Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH: sho00030 sho01200 sho01230 sho01100 sho01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: sho00030 sho00230 sho01200 sho01230 sho01100]
Other carbohydrate metabolism
M00014 Glucuronate pathway (uronate pathway) [PATH: sho00040 sho01100]
M00631 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH: sho00040 sho00030 sho01100]
M00061 D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH: sho00040 sho00030 sho01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH: sho00052 sho01100]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH: sho00500 sho01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH: sho00500 sho01100]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH: sho00520 sho01250 sho01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH: sho00520 sho00052 sho01250 sho01100]
M00892 UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH: sho00520 sho01250 sho01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH: sho00520 sho01250 sho01100]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH: sho00280 sho00630 sho00640 sho01200 sho01100]
M00130 Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4 [PATH: sho00562 sho01100]
M00131 Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol [PATH: sho00562 sho01100]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
M00101 Cholesterol biosynthesis, FPP => cholesterol [PATH: sho01100]
M00103 Cholecalciferol biosynthesis [PATH: sho01100]
M00106 Conjugated bile acid biosynthesis, cholate => taurocholate/glycocholate [PATH: sho01100]
M00862 beta-Oxidation, peroxisome, tri/dihydroxycholestanoyl-CoA => choloyl/chenodeoxycholoyl-CoA [PATH: sho01100]
M00107 Steroid hormone biosynthesis, cholesterol => pregnenolone => progesterone [PATH: sho01100]
M00109 C21-Steroid hormone biosynthesis, progesterone => cortisol/cortisone [PATH: sho01100]
M00110 C19/C18-Steroid hormone biosynthesis, pregnenolone => androstenedione => estrone [PATH: sho01100]
M00976 C19-Steroid hormone biosynthesis, pregnenolone => testosterone => dihydrotestosterone [PATH: sho01100]
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
M00073 N-glycan precursor trimming [PATH:sho01100]
M00075 N-glycan biosynthesis, complex type [PATH:sho01100]
M00872 O-glycan biosynthesis, mannose type (core M3) [PATH:sho00515 sho01100]
M00070 Glycosphingolipid biosynthesis, lacto-series, LacCer => Lc4Cer [PATH:sho01100]
M00071 Glycosphingolipid biosynthesis, neolacto-series, LacCer => nLc4Cer [PATH:sho01100]
M00068 Glycosphingolipid biosynthesis, globo-series, LacCer => Gb4Cer [PATH:sho01100]
M00069 Glycosphingolipid biosynthesis, ganglio series, LacCer => GT3 [PATH:sho01100]
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH:sho00730 sho01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:sho00740 sho01240 sho01100 sho01110]
M00916 Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:sho00750 sho01240 sho01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:sho00760 sho01240 sho01100]
M00912 NAD biosynthesis, tryptophan => quinolinate => NAD [PATH:sho00380 sho00760 sho01240 sho01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:sho00770 sho01240 sho01100 sho01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:sho00770 sho01240 sho01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:sho00780 sho01240 sho01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:sho00785 sho01240 sho01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:sho00785 sho01240 sho01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:sho00790 sho00670 sho01240 sho01100]
M00842 Tetrahydrobiopterin biosynthesis, GTP => BH4 [PATH:sho00790 sho01240 sho01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:sho00790 sho01240 sho01100]
M00140 C1-unit interconversion, prokaryotes [PATH:sho00670 sho01240 sho01100]
M00141 C1-unit interconversion, eukaryotes [PATH:sho00670 sho01240 sho01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:sho00860 sho01240 sho01100 sho01110]
M00868 Heme biosynthesis, animals and fungi, glycine => heme [PATH:sho00860 sho01240 sho01100 sho01110]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:sho00860 sho01240 sho01100]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:sho00860 sho01240 sho01100]
M00128 Ubiquinone biosynthesis, eukaryotes, 4-hydroxybenzoate + polyprenyl-PP => ubiquinol [PATH:sho00130 sho01240 sho01100]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:sho00130 sho01240 sho01100 sho01110]
M00930 Menaquinone biosynthesis, futalosine pathway [PATH:sho00130 sho01240 sho01100]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
Drug resistance
M00704 Tetracycline resistance, efflux pump Tet38
M00725 Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [PATH:sho01503]
M00726 Cationic antimicrobial peptide (CAMP) resistance, lysyl-phosphatidylglycerol (L-PG) synthase MprF [PATH:sho01503]
M00730 Cationic antimicrobial peptide (CAMP) resistance, VraFG transporter [PATH:sho01503]
M00700 Multidrug resistance, efflux pump AbcA
M00702 Multidrug resistance, efflux pump NorB
Plant pathogenicity
Symbiosis
Module set
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