Capra hircus

Capra hircus

Scientific Name	Capra hircus [TAX:9925]
Lineage	cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
DBLINKS	KEGG GENOME: T02910

Known viruses (32)

Scientific Name	Adeno-associated virus-Go.1 [TAX:296148]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae; Dependoparvovirus; Dependoparvovirus mammalian1; Bovine adeno-associated virus; Caprine adeno-associated virus
GenBank	DQ335246 Adeno-associated virus-Go.1, complete genome.
Evidence	Literature
Reference	PMID: 16926042
Authors	Qiu J, Cheng F, Pintel D
Title	Molecular characterization of caprine adeno-associated virus (AAV-Go.1) reveals striking similarity to human AAV5.
Journal	Virology. 2006 Dec 5-20;356(1-2):208-16.
DBLINKS	ViralZone: family, genus

Scientific Name	Akabane virus [TAX:70566]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Peribunyaviridae; Orthobunyavirus; Orthobunyavirus akabaneense
RefSeq	NC_009894 Akabane virus segment L, complete sequence. NC_009895 Akabane virus segment M, complete sequence. NC_009896 Akabane virus segment S, complete sequence.
Evidence	Literature
Reference	PMID: 17216138
Authors	Ogawa Y, Kato K, Tohya Y, Akashi H
Title	Sequence determination and functional analysis of the Akabane virus (family Bunyaviridae) L RNA segment.
Journal	Arch Virol. 2007;152(5):971-9.
DBLINKS	KEGG BRITE: NC_009894 NC_009895 NC_009896 ViralZone: family, genus

Scientific Name	Bluetongue virus [TAX:40051]
Lineage	Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Sedoreoviridae; Orbivirus
RefSeq	NC_006007 Bluetongue virus segment 8, complete sequence. NC_006008 Bluetongue virus gene for VP6 protein, complete cds. NC_006010 Bluetongue virus segment 6, complete sequence. NC_006013 Bluetongue virus VP2 gene, complete cds. NC_006014 Bluetongue virus segment 3, complete sequence. NC_006015 Bluetongue virus segment 10, complete sequence. NC_006022 Bluetongue virus segment 7, complete sequence. NC_006023 Bluetongue virus segment 1, complete sequence. NC_006024 Bluetongue virus segment 4, complete sequence. NC_006025 Bluetongue virus segment 5, complete sequence.
Evidence	UniProt
Evidence	Literature
Reference	PMID: 21411246
Authors	Falconi C, López-Olvera JR, Gortázar C
Title	BTV infection in wild ruminants, with emphasis on red deer: a review.
Journal	Vet Microbiol. 2011 Aug 5;151(3-4):209-19.
DBLINKS	KEGG BRITE: NC_006007 NC_006008 NC_006010 NC_006013 NC_006014 NC_006015 NC_006022 NC_006023 NC_006024 NC_006025 ICTV: 202204879 ViralZone: family, genus

Scientific Name	Border disease virus [TAX:358764]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Pestivirus; Pestivirus ovis
RefSeq	NC_003679 Border disease virus X818, complete genome.
Evidence	Literature
Reference	PMID: 1966719
Authors	Nettleton PF
Title	Pestivirus infections in ruminants other than cattle.
Journal	Rev Sci Tech. 1990 Mar;9(1):131-50.
DBLINKS	KEGG BRITE: NC_003679 ViralZone: family, genus

Scientific Name	Borna disease virus 1 [TAX:1714621]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Bornaviridae; Orthobornavirus; Orthobornavirus bornaense
RefSeq	NC_001607 Borna disease virus 1, complete sequence.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001607 ViralZone: family, genus

Scientific Name	Capra hircus papillomavirus 1 [TAX:338903]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Phipapillomavirus; Phipapillomavirus 1
RefSeq	NC_008032 Capra hircus papillomavirus type 1, complete genome.
Evidence	Other
Comment	goat
DBLINKS	KEGG BRITE: NC_008032 ViralZone: family, genus

Scientific Name	Caprine alphaherpesvirus 1 [TAX:39944]
Lineage	Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Orthoherpesviridae; Alphaherpesvirinae; Varicellovirus; Varicellovirus caprinealpha1
RefSeq	NC_076509 Caprine alphaherpesvirus 1 strain JSHA1405, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076509 ViralZone: family, genus

Scientific Name	Caprine arthritis encephalitis virus [TAX:11660]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
RefSeq	NC_001463 Caprine arthritis-encephalitis virus, complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_001463 ICTV: 202205027 ViralZone: family, genus

Scientific Name	Caprine arthritis encephalitis virus Roccaverano [TAX:507757]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus
GenBank	EU293537 Caprine arthritis encephalitis virus Roccaverano, complete genome.
Evidence	Literature
Reference	PMID: 18987157
Authors	Reina R, Grego E, Bertolotti L, De Meneghi D, Rosati S
Title	Genome analysis of small-ruminant lentivirus genotype E: a caprine lentivirus with natural deletions of the dUTPase subunit, vpr-like accessory gene, and 70-base-pair repeat of the U3 region.
Journal	J Virol. 2009 Jan;83(2):1152-5.
Comment	strain="Roccaverano"
DBLINKS	ViralZone: family, genus

Scientific Name	Caprine kobuvirus [TAX:1452516]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Kobuvirus; Aichivirus C
RefSeq	NC_023422 Caprine kobuvirus isolate 12Q108, complete genome.
Evidence	Literature
Reference	PMID: 24984842
Authors	Oem JK, Lee MH, Lee KK, An DJ
Title	Novel Kobuvirus species identified from black goat with diarrhea.
Journal	Vet Microbiol. 2014 Aug 27;172(3-4):563-7.
DBLINKS	KEGG BRITE: NC_023422 ViralZone: family, genus

Scientific Name	Caprine parainfluenza virus 3 [TAX:1529392]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Orthoparamyxovirinae; Respirovirus; Respirovirus caprae
RefSeq	NC_028362 Caprine parainfluenza virus 3 strain JS2013, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_028362 ViralZone: family, genus

Scientific Name	Cyclovirus PKgoat11/PAK/2009 [TAX:942034]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Cyclovirus; Cyclovirus bakri
RefSeq	NC_014928 Cyclovirus PKgoat11/PAK/2009, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_014928 ViralZone: genus, family

Scientific Name	Cyclovirus PKgoat21/PAK/2009 [TAX:942033]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Cyclovirus; unclassified Cyclovirus
RefSeq	NC_014927 Cyclovirus PKgoat21/PAK/2009, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_014927 ViralZone: genus, family

Scientific Name	enterovirus D70 [TAX:12090]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Ensavirinae; Enterovirus; Enterovirus D
GenBank	D00820 Human enterovirus 70 genomic RNA, complete genome, strain: J670/71.
DISEASE	H01421 Acute hemorrhagic conjunctivitis
Evidence	Literature
Reference	PMID: 2172447
Authors	Ryan MD, Jenkins O, Hughes PJ, Brown A, Knowles NJ, Booth D, Minor PD, Almond JW
Title	The complete nucleotide sequence of enterovirus type 70: relationships with other members of the picornaviridae.
Journal	J Gen Virol. 1990 Oct;71 ( Pt 10):2291-9.
Comment	Culture cell line: HEp-2c cells
DBLINKS	KEGG GENOME: T40334 ViralZone: family, genus

Scientific Name	Enterovirus goat/JL14 [TAX:1849328]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Ensavirinae; Enterovirus; unclassified Enterovirus
RefSeq	NC_034267 Enterovirus goat/JL14, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_034267 ViralZone: family, genus

Scientific Name	Enzootic nasal tumor virus 2 [TAX:2913605]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Betaretrovirus; unclassified Betaretrovirus
RefSeq	NC_004994 Enzootic nasal tumour virus of goats, complete genome.
Evidence	Literature
Reference	PMID: 12867657
Authors	Ortín A, Cousens C, Minguijón E, Pascual Z, Villarreal MP, Sharp JM, Heras Mde L
Title	Characterization of enzootic nasal tumour virus of goats: complete sequence and tissue distribution.
Journal	J Gen Virol. 2003 Aug;84(Pt 8):2245-52.
DBLINKS	KEGG BRITE: NC_004994 ViralZone: family, genus

Scientific Name	Foot-and-mouth disease virus C1 [TAX:12121]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Caphthovirinae; Aphthovirus; Foot-and-mouth disease virus; Foot and mouth disease virus C
GenBank	AY593805 Foot-and-mouth disease virus C1 isolate c1ober iso88, complete genome.
Evidence	UniProt
DBLINKS	ViralZone: family, genus

Scientific Name	Goat associated porprismacovirus [TAX:2530493]
Lineage	Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus; Porprismacovirus goas1
RefSeq	NC_076259 Goat associated porprismacovirus isolate 16915x9_1969, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_076259

Scientific Name	Goat torovirus [TAX:1837217]
Lineage	Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Tornidovirineae; Tobaniviridae; Torovirinae; Torovirus; unclassified Torovirus
RefSeq	NC_034976 Goat torovirus strain SZ, complete genome.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_034976 ViralZone: genus, family

Scientific Name	Goatpox virus Pellor [TAX:376852]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Capripoxvirus; Goatpox virus
RefSeq	NC_004003 Goatpox virus Pellor, complete genome.
Evidence	Literature
Reference	PMID: 12021338
Authors	Tulman ER, Afonso CL, Lu Z, Zsak L, Sur JH, Sandybaev NT, Kerembekova UZ, Zaitsev VL, Kutish GF, Rock DL
Title	The genomes of sheeppox and goatpox viruses.
Journal	J Virol. 2002 Jun;76(12):6054-61.
DBLINKS	KEGG BRITE: NC_004003 ViralZone: genus, family

Scientific Name	Lyssavirus rabies [TAX:11292]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Lyssavirus
RefSeq	NC_001542 Rabies virus, complete genome.
DISEASE	H00377 Rabies
Evidence	Literature
Reference	PMID: 18795848
Authors	Blanton JD, Palmer D, Christian KA, Rupprecht CE
Title	Rabies surveillance in the United States during 2007.
Journal	J Am Vet Med Assoc. 2008 Sep 15;233(6):884-97.
DBLINKS	KEGG BRITE: NC_001542 KEGG GENOME: T40022 ICTV: 202201733 ViralZone: family, genus

Scientific Name	Orf virus [TAX:10258]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Parapoxvirus
RefSeq	NC_005336 Orf virus, complete genome.
DISEASE	H02354 Orf; Contagious pustular dermatitis; Contagious ecthyma
Evidence	UniProt
Evidence	Literature
Reference	PMID: 14671098
Authors	Delhon G, Tulman ER, Afonso CL, Lu Z, de la Concha-Bermejillo A, Lehmkuhl HD, Piccone ME, Kutish GF, Rock DL
Title	Genomes of the parapoxviruses ORF virus and bovine papular stomatitis virus.
Journal	J Virol. 2004 Jan;78(1):168-77.
DBLINKS	KEGG BRITE: NC_005336 KEGG GENOME: T40126 ICTV: 202204780 ViralZone: genus, family

Scientific Name	Peaton virus [TAX:159151]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Peribunyaviridae; Orthobunyavirus; Orthobunyavirus peachesterense
RefSeq	NC_043549 Peaton virus N and NSs genes, segment S, genomic RNA, isolate CSIRO 110. NC_043550 Peaton virus RdRp gene for RNA-dependent RNA polymerase, segment L, genomic RNA, isolate CSIRO 110. NC_043551 Peaton virus Gn-Gc-NSm gene for M polyprotein, segment M, genomic RNA, isolate CSIRO 110.
Evidence	Literature
Reference	PMID: 7436869
Authors	St George TD, Standfast HA, Cybinski DH, Filippich C, Carley JG
Title	Peaton virus: a new Simbu group arbovirus isolated from cattle and Culicoides brevitarsis in Australia.
Journal	Aust J Biol Sci. 1980 May;33(2):235-43.
Comment	Culture cell line: BHK21 cells Culture cell line: BHK21 cells
DBLINKS	KEGG BRITE: NC_043549 NC_043550 NC_043551 ViralZone: family, genus

Scientific Name	Peste des petits ruminants virus [TAX:2593991]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Orthoparamyxovirinae; Morbillivirus; Morbillivirus caprinae
RefSeq	NC_006383 Peste des petits ruminants virus complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_006383 ViralZone: family, genus

Scientific Name	Pestivirus Burdur/05-TR [TAX:1594788]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Pestivirus; Pestivirus aydinense
GenBank	KM408491 Pestivirus Burdur/05-TR, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family, genus

Scientific Name	Rift Valley fever virus [TAX:11588]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Phenuiviridae; Phlebovirus; Phlebovirus riftense
RefSeq	NC_014395 Rift Valley fever virus segment S, complete genome. NC_014396 Rift Valley fever virus segment M, complete genome. NC_014397 Rift Valley fever virus segment L, complete genome.
DISEASE	H01549 Rift Valley fever
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_014395 NC_014396 NC_014397 KEGG GENOME: T40030 ViralZone: family, genus

Scientific Name	Rinderpest virus (strain Kabete O) [TAX:11242]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Orthoparamyxovirinae; Morbillivirus; Morbillivirus pecoris; Rinderpest morbillivirus
RefSeq	NC_006296 Rinderpest virus (strain Kabete O), complete genome.
Evidence	UniProt
DBLINKS	KEGG BRITE: NC_006296 ViralZone: family, genus

Scientific Name	Sabo virus [TAX:159138]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Peribunyaviridae; Orthobunyavirus; Orthobunyavirus saboense
RefSeq	NC_043552 Sabo virus Gn-Gc-NSm gene for M polyprotein, segment M, genomic RNA, isolate IB AN 9398. NC_043553 Sabo virus RdRp gene for RNA-dependent RNA polymerase, segment L, genomic RNA, isolate IB AN 9398. NC_043554 Sabo virus N and NSs genes, segment S, genomic RNA, isolate IB AN 9398.
Evidence	Literature
Reference	PMID: 4634776
Authors	Causey OR, Kemp GE, Causey CE, Lee VH
Title	Isolations of Simbu-group viruses in Ibadan, Nigeria 1964-69, including the new types Sango, Shamonda, Sabo and Shuni.
Journal	Ann Trop Med Parasitol. 1972 Sep;66(3):357-62.
DBLINKS	KEGG BRITE: NC_043552 NC_043553 NC_043554 ViralZone: family, genus

Scientific Name	Sheeppox virus [TAX:10266]
Lineage	Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Capripoxvirus
RefSeq	NC_004002 Sheeppox virus 17077-99, complete genome.
Evidence	Literature
Reference	PMID: 12021338
Authors	Tulman ER, Afonso CL, Lu Z, Zsak L, Sur JH, Sandybaev NT, Kerembekova UZ, Zaitsev VL, Kutish GF, Rock DL
Title	The genomes of sheeppox and goatpox viruses.
Journal	J Virol. 2002 Jun;76(12):6054-61.
DBLINKS	KEGG BRITE: NC_004002 ICTV: 202204753 ViralZone: genus, family

Scientific Name	Small ruminant lentivirus [TAX:254355]
Lineage	Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus
GenBank	HM210570 Small ruminant lentivirus strain FESC-752, complete genome.
Evidence	GenBank
DBLINKS	ViralZone: family, genus

Scientific Name	Spanish goat encephalitis virus [TAX:1691889]
Lineage	Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Orthoflavivirus; unclassified Orthoflavivirus
RefSeq	NC_027709 Spanish goat encephalitis virus isolate AstGoatIREC2011, complete genome.
Evidence	Literature
Reference	PMID: 25701823
Authors	Mansfield KL, Morales AB, Johnson N, Ayllón N, Höfle U, Alberdi P, Fernández de Mera IG, Marín JF, Gortázar C, de la Fuente J, Fooks AR
Title	Identification and characterization of a novel tick-borne flavivirus subtype in goats (Capra hircus) in Spain.
Journal	J Gen Virol. 2015 Jul;96(Pt 7):1676-81.
DBLINKS	KEGG BRITE: NC_027709 ViralZone: family, genus

Scientific Name	Tunisian small ruminant pestivirus [TAX:1827005]
Lineage	Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; Ellioviricetes; Bunyavirales; Tulasviridae; Orthotulasvirus; Orthotulasvirus tulasnellae
RefSeq	NC_077146 Tunisian small ruminant pestivirus strain 92019/2007/AG polyprotein (QKV27_gp1) gene, complete cds.
Evidence	RefSeq
DBLINKS	KEGG BRITE: NC_077146